Pinned Repositories
test
vAMPirus
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
vAMPirusExamples
autodada2
Script suite to analyse amplicon sequencing data using the dada2 pipeline. Parameters for certain steps of the pipeline can be edited for specific genes. The default parameters are currently tailored towards ITS2 data.
SCTLDviruses
scripts and workflows for Florida SCTLD virus analyses
BASALT
Tracking_viruses_analyses
This repository holds all scripts related to the virus sequence analysis associated with the Florida DEP funded project entiled "Tracking Bacterial, Viral, and Gene Expression Shifts throughout SCTLD Development in the Dry Tortugas"
Aveglia's Repositories
Aveglia/vAMPirus
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
Aveglia/test
Aveglia/vAMPirusExamples