Pinned Repositories
cancer-trial-match
nextflow-kallisto
nextflow-rnastar
nextflow pipeline for transcriptome quantificaton using STAR and featurecounts
nfreq
calculate nucleotide frequencies and compute pertinent negatives from variant calls
ngs-docker-star
docker container for the star aligner
NGS-QC-Report
scripts
TrialBrowse
TrialCurate
TrialEdit
AveraSD's Repositories
AveraSD/nextflow-rnastar
nextflow pipeline for transcriptome quantificaton using STAR and featurecounts
AveraSD/nextflow-kallisto
AveraSD/cancer-trial-match
AveraSD/ngs-docker-star
docker container for the star aligner
AveraSD/NGS-QC-Report
AveraSD/scripts
AveraSD/knowledge_app
Database to collect and retrieve biomarker/drug information
AveraSD/nfreq
calculate nucleotide frequencies and compute pertinent negatives from variant calls
AveraSD/trial-curate-app
AveraSD/trial_browse_app
AveraSD/trial_edit_app
AveraSD/TrialBrowse
AveraSD/TrialCurate
AveraSD/TrialEdit
AveraSD/cancer_ref_cohorts
reference cohorts for processing patient samples in the n-of-1 setting
AveraSD/ikmb_crc_sv
Project to identify clinically relevant SVs in metastatic colorectal cancer from different types of sequencing data.
AveraSD/matchengine-V2
Open source engine for matching cancer patients to precision medicine clinical trials (V2).
AveraSD/matchminer-api
A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials
AveraSD/matchminer-ui
A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials
AveraSD/ngs-base
ngs-base docker container
AveraSD/nof1_rnaseq
AveraSD/Spladder_v1
Patient based splice site events identification tool