/tiny_env

Primary LanguageRust

TinyENV

This is a tiny environment management script.

Build

tiny_env is written in Rust, so you'll need to grab a Rust installation to compile it.

cargo build --release

Usage

An example config is in the examples folder.

conda = "/work/software/conda3/"

[minimap2]
PATH = "/work/software/minimap2/bin"

[hts]
conda = "/work/software/hts/hts-conda3"

[samtools]
require = ["hts"]

When running command tiny_env -c example.config.toml samtools minimap2, will genreate a file named env.profile.

# software config is "examples/example.config.toml" activate modules {"hts", "samtools", "minimap2"}
source /work/software/conda3/bin/activate /work/software/hts/hts-conda3
export PATH=/work/software/minimap2/bin:$PATH

TODO

  • Find base conda environment by conda cli.
  • Add conflict keywords.
  • Add version to deal with different versions.