BCMSLab

3T3-L1

Code for the Oncotarget paper (Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access data.)

aacna

Code for the IJMS paper (Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation)

LINPS

LINPS: A database for cancer cell-specific perturbations of biological networks

LINPSAPP

LINPSAPP: A web interface for the database of cancer cell-specific perturbations of biological networks

rkip

Code for the Cancers paper (Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer)

rkip_metastasis

rkiprev

Code for the book chapter (Anti-cancer effect of RKIP via modulating autophagy during metastasis)

target_ranking

Code for the BMC Genomics paper (Integrating binding and expression data to predict transcription factors combined function)

task_perturbation

Code for the article "Disruption of cancer cell functions by task-specific drug perturbations"

task_separation

Code for the article "Cancer cells forgo translating the transcribed genes of non-specialized tasks"

BCMSLab/LINPSAPP

LINPSAPP: A web interface for the database of cancer cell-specific perturbations of biological networks

BCMSLab/3T3-L1

Code for the Oncotarget paper (Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access data.)

BCMSLab/rkip

Code for the Cancers paper (Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer)

BCMSLab/aacna

Code for the IJMS paper (Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation)

BCMSLab/LINPS

LINPS: A database for cancer cell-specific perturbations of biological networks

BCMSLab/task_perturbation

Code for the article "Disruption of cancer cell functions by task-specific drug perturbations"

BCMSLab/colocrart

Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)

BCMSLab/cregart

Code for the PeerJ paper (cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer)

BCMSLab/Evaluation-of-Reference-Genes-in-an-In-Vitro-Study-of-Mouse-BAT-Differentiation-Thermogenesis

Data source code of the manuscript 'Reliable reference genes for expression analysis of adipogenically differentiating brown mouse adipose stromal cells'

BCMSLab/latex_templates

A collection of latex templates.

BCMSLab/orlistat_meta_analysis

Preprint: Meta-analysis of the Effect of Orlistat on The Body Mass Index in Obese Subjects

BCMSLab/rkip_metastasis

BCMSLab/rkiprev

Code for the book chapter (Anti-cancer effect of RKIP via modulating autophagy during metastasis)

BCMSLab/target_ranking

Code for the BMC Genomics paper (Integrating binding and expression data to predict transcription factors combined function)

BCMSLab/task_separation

Code for the article "Cancer cells forgo translating the transcribed genes of non-specialized tasks"

BCMSLab/adipo_deconv

Code for the preprint "A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change"

BCMSLab/antimetastatic

Source code for the article "A functional network model of the metastasis suppressor RKIP and its regulators in breast cancer cells"

BCMSLab/aos

Code for the (unpublished) paper ( Regulation of autophagy in response to oxidative stress)

BCMSLab/auto_adipo_diff

Code for the Cells paper (Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis)

BCMSLab/autoreg

A research compendium: Transcriptional regulation of autophagy during adipocyte differentiation

BCMSLab/curated_adipo_descriptor

Code for the Adipocyte paper (Modeling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes)

BCMSLab/curated_perturbed_descriptor

Code for the Adipocyte paper (Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbations)

BCMSLab/hierarchical_autophagy_regulation

Research compendium for the preprint "Hierarchical Regulation of Autophagy During Adipocyte Differentiation"

BCMSLab/obese_mice

Code for the data descriptor paper (Tissue-specific gene expression in obese hyperglycemic mice)

BCMSLab/ObMiTi