Add limitBAMsortRAM to STAR
Closed this issue · 3 comments
jvivian commented
Large input files cause failure by using more memory than expected during the sort step.
add:
'--limitBAMsortRAM', '42950000000', to STAR, which is 40GiB -- the current memory allocation currently assigned to STAR.
jvivian commented
Related to BD2KGenomics/toil-rnaseq#16 - issue was using the wrong instance (specifically not enough memory) given the large sample input.
jvivian commented
closed prematurely