jvivian
Bioinformatics Ph.D. Principal Bioinformatics Scientist. IDEAYA Biosciences. Python, Bayesian inference, Rust, technical metal, drumming, physics
Ideaya BiosciencesUnited States
Pinned Repositories
toil-rnaseq
UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
BD2K-Summer-Workshop
Teaching the fundamentals of bioinformatics and data science. BD2K Summer Workshop 2016
blog
Repository for posts / code that don't need their own repo
DFMDash
Easily drag-and-drop to build, run, and explore Dynamic Factor models in a browser-based GUI
fastq_pair
FASTQ pairing algorithms written in Rust
gene-outlier-detection
A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.
ipython_notebooks
An eclectic collection of ipython notebooks
rnaseq-notebooks
Jupyter Notebooks for RNA-seq TCGA/GTEx Cancer Study
rnaseq-recompute-analysis
Analysis of RNA-seq recompute expression data
jvivian's Repositories
jvivian/gene-outlier-detection
A Bayesian model for identifying gene expression outliers for individual single samples (N-of-1) when compared to a cohort of background datasets.
jvivian/fastq_pair
FASTQ pairing algorithms written in Rust
jvivian/DFMDash
Easily drag-and-drop to build, run, and explore Dynamic Factor models in a browser-based GUI
jvivian/hero-realms-dashboard
jvivian/SystemMonitor
CPU, RAM, GPU/VRAM (via nvidia-smi) usage in the terminal
jvivian/blog
Repository for posts / code that don't need their own repo
jvivian/odd-pi
Library for managing Object Detection over Discord using a Raspberry Pi
jvivian/advent-of-code
Advent of Code challenges
jvivian/advent-of-code-2018
2018 Advent of Code challenges done in Rust
jvivian/arrow-dplyr
A quick lightning talk on using arrow and dplyr together
jvivian/averse
Averse is a recipe store and meal planner written in Rust as an exercise
jvivian/Bayesian-Outlier-Model
Identify gene outliers from RNA-seq expression
jvivian/crossword
Crossword generator engine in Python
jvivian/dev
Dev
jvivian/dotfiles
My dotfiles synced form localhost and remote machines
jvivian/fastbook
The fastai book, published as Jupyter Notebooks
jvivian/GPT-From-Scratch
Repository for learning about Attention/Transformer architecture by building one from scratch
jvivian/hungarian-billet-matching
jvivian/jvivian.github.io
Personal Website
jvivian/Kalman-and-Bayesian-Filters-in-Python
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.
jvivian/kickstart.nvim
A launch point for your personal nvim configuration
jvivian/LazyVim
Neovim config for the lazy
jvivian/nbdev-test
no
jvivian/nbdev_tutorial
jvivian/rnaseq-lib3
RNA-seq convenience library for Python3
jvivian/sd-infinity-grid-generator-script
Infinite-Axis Grid Generator for Stable Diffusion!
jvivian/sd-stats-dash
Textual-based statistics dashboard
jvivian/slides
Repository of slides for sharing / historical purposes
jvivian/SyntheticControlMethods
A Python package for causal inference using Synthetic Controls
jvivian/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.