Support piped commands in docker_call
Closed this issue · 2 comments
glennhickey commented
toil-vg needs to be able to run things like vg ids -s graph.vg | vg mod -X 100 > output.graph, where vg can be a docker container.
Am currently using cmarkello@75c2159
This logic needs to get pushed up so we don't get too far out of sync. Will make a cleaned up PR shortly.
glennhickey commented
I see that this function is duplicated in toil. Looking at the issues, it seems that's where it should be. Will PR this update into toil instead.
jvivian commented
@glennhickey — Do you want to close this and open a new issue against Toil?