BDGCX

BDGCX's Stars

• heomics/IgAN_scRNAseq

  Language:R11

• dtm2451/ProgressiveHematopoiesis

  Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.

  116

• Dragonlongzhilin/RenalTumor

  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma

  Language:Jupyter Notebook7330

• ajwilk/2020_Wilk_COVID

  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

  Language:R4636

• YosefLab/VISION

  Signature Analysis and Visualization for Single-Cell RNA-seq

  Language:R15430

• YosefLab/Compass

  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

  Language:Python9325

• wu-yc/scMetabolism

  Quantifying metabolism activity at the single-cell resolution

  Language:R10943

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R467117

• cole-trapnell-lab/monocle-release

  Language:R276116

• Teichlab/celltypist

  A tool for semi-automatic cell type classification

  Language:Python28244

• lmcinnes/umap

  Uniform Manifold Approximation and Projection

  Language:Python7.4k801

• theislab/destiny

  R package for single cell and other data analysis using diffusion maps

  Language:R7512

• mahmoudibrahim/KidneyMap

  Language:R115

• rajewsky-lab/dropbead

  Language:HTML68

• Steven-M-Hill/PCHiC-specificity-score-analysis

  Script for the specificity score analysis in Javierre, Burren, Wilder, Kreuzhuber, Hill et al. (2016).

  Language:R53

• AllenInstitute/scrattch.hicat

  Hierarchical, iterative clustering for analysis of transcriptomics data in R

  Language:HTML10631

• kharchenkolab/pagoda2

  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

  Language:JavaScript20447

• PingChen-Angela/scRNA_kidney_NatureCommunications2021

  Language:Jupyter Notebook4

• jackfrued/Python-100-Days

  Python - 100天从新手到大师

  Language:Python155k52.1k

• basilkhuder/Seurat-to-RNA-Velocity

  A guide to using a Seurat object in conjunction with RNA Velocity

  13027

• jmzeng1314/scRNA_smart_seq2

  Language:HTML298230