BRAIN Initiative Cell Census Network (BICCN)
BICCN aims to provide researchers with a comprehensive reference of the diverse cell types in human, monkey, and mouse brain.
Pinned Repositories
2020-BICCN-Portals-Workshop
This site contains the material and documentation supporting the BICCN portals workshop held on 2020.
AnatomyCompanion
BCDC-Metadata
Interim repository for BCDC metadata per quarter.
BICCN-Infrastructure
Documentation about BICCN Infrastructure and Data Policies
cell-locator
manually align specimens to annotated 3D spaces
CellCensusMotorCortex
Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"
NeMO-Broad-Demo-2018
This demo describes data flow between NeMO and the Broad
Quarterly_Submission_Receipts
Repository for Quarterly Submission Receipts.
terra-import-builder
Cloud Function for staging JSON payloads in GCS for use by Terra's pull-based import API.
TMN
Repository for work on neuroscience techniques ontology development.
BRAIN Initiative Cell Census Network (BICCN)'s Repositories
BICCN/CellCensusMotorCortex
Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"
BICCN/cell-locator
manually align specimens to annotated 3D spaces
BICCN/BCDC-Metadata
Interim repository for BCDC metadata per quarter.
BICCN/AnatomyCompanion
BICCN/terra-import-builder
Cloud Function for staging JSON payloads in GCS for use by Terra's pull-based import API.
BICCN/BICCN-Infrastructure
Documentation about BICCN Infrastructure and Data Policies
BICCN/Quarterly_Submission_Receipts
Repository for Quarterly Submission Receipts.
BICCN/2020-BICCN-Portals-Workshop
This site contains the material and documentation supporting the BICCN portals workshop held on 2020.
BICCN/NeMO-Broad-Demo-2018
This demo describes data flow between NeMO and the Broad
BICCN/TMN
Repository for work on neuroscience techniques ontology development.
BICCN/Anatomy-Transcriptomics-Portal-Wiki
This repo describes the Anatomy and Transcriptomics joint portal comprised of the Cold Spring Harbor Laboratory Brain Architecture portal and the Broad Institute's Single Cell Portal.
BICCN/BCDC-documentation
Documentation for BCDC
BICCN/BICCN.github.io
BICCN/ccf_registration_2020
CCF Registration Competition 2020
BICCN/controlled-vocabularies.github.io
BICCN/morphology-inventory-prototype
Repository to share document, example code and data towards creating a standardized whole brain morphology inventory
BICCN/nemo-terra-cloud-computing
The wiki to this repo describes the joint NeMO (Univ Maryland) and Terra (Broad) Cloud Computing Environment for the BCDC.
BICCN/OSDF
Open Science Data Framework (OSDF)
BICCN/probe_selection
Tools for for selecting probes for in situ transcriptomics using scRNA-Seq data
BICCN/swc_specification
Information about the SWC file specification