Code repository for the following publication:
Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention
https://www.biorxiv.org/content/10.1101/2020.05.05.079194v1
Can be found in the supplementary materials, on GEO, downloaded from the website, or from the following Zenodo link: 10.5281/zenodo.4031204
Contains the code to reproduce all of the figures for the single cell analysis.
Code for pre-processing of scRNAseq data. Can be used for both Calu3 and H1299 samples.
For any questions, please contact emanuel.wyler@mdc-berlin.de or vedran.franke@mdc-berlin.de