BIONF

Pinned Repositories

FAS
FAS - Tool for Feature Architecture Similarity calculation
Language:Python4 6 71
fCAT
Python package for fCAT, a feature-aware completeness assessment tool
Language:Python2 2 30
fDOG
Feature-aware Directed OrtholoG search
Language:Python9 5 243
HaMStR
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
Language:Perl9 9 202
PhyloProfile
A phylogenetic profile analysis tool
Language:R32 10 639
phyloprofile-data
Data files for PhyloProfile tool
1 4 01
phyloprofile_oneseq
in-house version of PhyloProfile
Language:R2 3 01
protTrace
A simulation based framework to estimate the evolutionary traceability of protein.
Language:Python5 4 24
RScaffolder
Multi-Reference Assisted Bacterial Genome Scaffolder
Language:Python3 3 01
taXaminer
Interactive exploration of biodiverse genome assemblies
Language:Python2 2 01

BIONF's Repositories

BIONF/PhyloProfile
A phylogenetic profile analysis tool
Language:R32 10 639
BIONF/fDOG
Feature-aware Directed OrtholoG search
Language:Python9 5 243
BIONF/HaMStR
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
Language:Perl9 9 202
BIONF/protTrace
A simulation based framework to estimate the evolutionary traceability of protein.
Language:Python5 4 24
BIONF/FAS
FAS - Tool for Feature Architecture Similarity calculation
Language:Python4 6 71
BIONF/fCAT
Python package for fCAT, a feature-aware completeness assessment tool
Language:Python2 2 30
BIONF/taXaminer
Interactive exploration of biodiverse genome assemblies
Language:Python2 2 01
BIONF/MATT
MATT
Language:JavaScript1 2 00
BIONF/taxaminer-dashboard
Web-based visualization and exploration of taXaminer datasets
Language:TypeScript1 3 81
BIONF/dcc2
Dynamic core orthologs compilation tool
Language:Python0 2 00
BIONF/uGene
Complementary software to PhyloProfile, designed for preprocessing extensive phylogenetic profiles.
Language:Python0 2 00
BIONF/vicinator
Language:Python0 3 00
BIONF/XspecT2
XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically classify raw sequence-data, whole genome assemblies or metagenomes on the species level
Language:Python0 2 00
BIONF/BIOM
BIOlogical data Management Tool
Language:Python1 0
BIONF/bionf_cookiecutter
A minimalist cookiecutter for research and data science projects
Language:Python
BIONF/cell_wall
Language:Jupyter Notebook1
BIONF/CEPLA
Pairwise comparisons of proteins based on their epitope landscape profiles
Language:OpenEdge ABL1 0
BIONF/conda-recipes
Conda recipes
Language:Shell4 0
BIONF/data4travis
Data for testing in-house tools with travis-ci
4 0
BIONF/digital_competence
Language:Jupyter Notebook3 02
BIONF/g_nom
Language:TypeScript1 0
BIONF/ncortho
Targeted ortholog search for miRNAs
Language:Python1 0
BIONF/PhyloProfileCorona
Lite version of PhyloProfile for corona data
Language:R2 01
BIONF/PhyloProfileData
The PhyloProfileData package provides a collection of datasets to accompany the PhyloProfile package
Language:R4 0
BIONF/PhyloRBF
Language:R1 0
BIONF/phylosophy
R Toolkit for generating and exploring phylogenetic profiles
Language:R2 0
BIONF/sharingiscaring
Language:Jupyter Notebook4 0
BIONF/SPICE
Tool that utilizes FAS on entire sets of transcripts to assess the impact of alternative splicing on proteome function.
Language:Python2 0
BIONF/Syntgeny
Language:Python1 0
BIONF/XspecT
Language:Python3 1