BIOP/ijp-imagetoatlas

ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)

Aligning Big Brains & Atlases

ImageJ/Fiji plugin that align images with the Allen Brain Atlas within Fiji.

Documentation: https://abba-documentation.readthedocs.io

This repository is the core Java package that runs ABBA on the ImageJ/Fiji side. There are associated repositories:

• Documentation
• QuPath extension
• Python wrapper
• Windows installer generator
• BraiAn - Brain Analysis for post-registration analysis