BMEngineeR
Ph. D of Biomedical Informatics, On the way to computational immuno-oncology.
The Ohio State UniversityLincoln Tower 310, Columbus, OH
Pinned Repositories
AD_project_Fu
bmbl-notebooks
BulkRNA-seq
BulkRNAseq pipeline
CellTypePrediction
R script for cell type prediction based on CellMarker database and hypergeometric test
DESSO
A DL-based framework for sequence and shape motif identification in the human genome
IRIS-CEM
IRISFGM
Development repository for the IRISFGM package for submission purposes
Methylation
Methylation Pipeline
scGNNLTMG
LTMG for scGNN
Sex-bias-in-cancer-ScienceImmunology-2022
This is for paper submission
BMEngineeR's Repositories
BMEngineeR/IRISFGM
Development repository for the IRISFGM package for submission purposes
BMEngineeR/BulkRNA-seq
BulkRNAseq pipeline
BMEngineeR/CellTypePrediction
R script for cell type prediction based on CellMarker database and hypergeometric test
BMEngineeR/IRIS-CEM
BMEngineeR/scGNNLTMG
LTMG for scGNN
BMEngineeR/Sex-bias-in-cancer-ScienceImmunology-2022
This is for paper submission
BMEngineeR/AD_project_Fu
BMEngineeR/bmbl-notebooks
BMEngineeR/DESSO
A DL-based framework for sequence and shape motif identification in the human genome
BMEngineeR/Methylation
Methylation Pipeline
BMEngineeR/BMEngineeR.github.io
my github page
BMEngineeR/GeoMXBatchCorrection
GeoMX data batch correction example
BMEngineeR/GMB_analysis_LiLab
The code demonstrate the analysis for glioblastoma GBM analysis
BMEngineeR/IRIS-FGM-image-pool
BMEngineeR/IRISCEM
developed IRIS-CEM, integrative and interpretation system for co-expression module analysis. IRIS-CEM contains four major steps: (i) data preprocessing and regulatory signal modeling; (ii) co-expression gene module identification; (iii) cell clustering; (iv) co-expression module and differentially expressed gene analysis.
BMEngineeR/IRISFGM-data
This link provide data for supplementary file
BMEngineeR/midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
BMEngineeR/Online_R_learning
Online R learning for applied statistics
BMEngineeR/scRNA-seq-notebook
BMEngineeR/single_cell_spatial_image
BMEngineeR/SpaTalk
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
BMEngineeR/SscRNA-viz
Visualization application for spatially structured single-cell RNA-seq data
BMEngineeR/trendsceek
Identify genes with spatial expression trends in single-cell gene expression data
BMEngineeR/vue3-template