/btp-module-ngs-mapping

Bioinformatics Training Platform (BTP) Module: NGS read mapping with Bowtie2

Primary LanguageJavaScript

NGS Read Mapping

Bioinformatics Training Platform (BTP) Module: NGS Read Mapping with Bowtie2

  • Topic
    • NGS Read Mapping with Bowtie2
  • Target Audience
    • Biologists
    • Non-bioinformaticians
    • Little to no programming expereience
  • Prerequisites
    • None
  • Key Learning Outcomes
    • Perform the simple NGS data alignment task against one interested reference data
    • Interpret and manipulate the mapping output using SAMtools
    • Visualise the alignment via a standard genome browser, e.g. IGV browser
  • Time Required
    • 2 hrs

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB