/cancer-module-snv

cancer-module-snv

Primary LanguageJavaScript

Single Nucleotide Variant Call and Annotation

Bioinformatics Training Platform (BTP) Module: Single Nucleotide Variant Call and Annotation

  • Topic
    • Single Nucleotide Variant Call and Annotation
  • Target Audience
    • Biologists
    • Non-bioinformaticians
    • Little to no programming expereience
  • Prerequisites
    • None
  • Key Learning Outcomes
    • Prepare raw BAM alignments for variant detection
    • Perform QC measures on BAM files
    • Understand and perform simple variant detection on paired NGS data
    • Add annotation information to raw variant calls
    • Visualise variant calls using IGV
  • Time Required *

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB