Pinned Repositories
data_submission_scripts
Accessory scripts to facilitate fastq and assembly data prep for submissions to NCBI and other public repositories
fl_cg_snp
FL BPHL's core genome SNP pipeline for the identification of clusters of closely related bacterial isolates
flisochar
Florida Bacterial Isolate Characterization
flisochar_wf
A new web-deployed workflow of FLISOCHAR that processes both ONT and PacBio long reads
GentySpuds
A Nextflow workflow to seek the genotyping of Enterovirus using short-read sequencing data
miscellaneous_scripts
Nextflow_cat_nextseq_fastqs_BSupload
The Nextflow version of cat_nextseq_fastqs_BSupload.py
PacBio_standalone_tools
Sanibel
A Nextflow pipeline to analyze NGS data in fastq format from bacterial genome
Talbot
A Nextflow pipeline for pang genome analyses including phylogenic tree. The pipeline is a upgraded version of the pipeline fl_cg_snp.
BPHL-Molecular's Repositories
BPHL-Molecular/Talbot
A Nextflow pipeline for pang genome analyses including phylogenic tree. The pipeline is a upgraded version of the pipeline fl_cg_snp.
BPHL-Molecular/Nextflow_cat_nextseq_fastqs_BSupload
The Nextflow version of cat_nextseq_fastqs_BSupload.py
BPHL-Molecular/data_visualization_R_scripts
Various R scripts and notebooks with example code for tree and other data visualizations