Bioinformatics Lab - Department of Computer Science - University Freiburg

Freiburg

Pinned Repositories

CRISPRcasIdentifier
Machine learning for accurate identification and classification of CRISPR-Cas systems
Language:Python19 7 46
CRISPRidentify
Language:Python21 6 176
CRISPRloci
Language:Python13 7 86
GGL
Graph Grammar Library
Language:C++23 5 26
GraphClust-2
A pipeline for structural clustering of RNA secondary structures
Language:Python14 6 304
GraphProt2
Modelling RBP binding preferences to predict RPB binding sites
Language:Python92
IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
Language:C++44 10 13827
RNA-Playground
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
Language:JavaScript34 5 1316
RNAProt
Modelling RBP binding preferences to predict RPB binding sites
Language:Python9 5 44
ShaKer
SHApe simulation with graph KERnels
Language:Jupyter Notebook84

Bioinformatics Lab - Department of Computer Science - University Freiburg's Repositories

BackofenLab/IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
Language:C++44 10 13827
BackofenLab/RNA-Playground
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
Language:JavaScript34 5 1316
BackofenLab/CRISPRidentify
Language:Python21 6 176
BackofenLab/CRISPRloci
Language:Python13 7 86
BackofenLab/RNAProt
Modelling RBP binding preferences to predict RPB binding sites
Language:Python9 5 44
BackofenLab/DeepAcr
Language:Python4 7 40
BackofenLab/BioNetViz
An integrated graph system of biological entities, functional terms, and publications.
Language:Vue1
BackofenLab/LatPack
Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions
Language:C++1 5 11
BackofenLab/MutARNA
Language:Jupyter Notebook1 9 01
BackofenLab/RBPBench
Language:Python1
BackofenLab/B1_01_biology-basics
Language:Python
BackofenLab/B1_02_edit-distance
Language:Python
BackofenLab/B1_03_align-linear-gap
Language:Python
BackofenLab/B1_04_align-affine-gap
Language:Python
BackofenLab/B1_05_align-local
Language:Python
BackofenLab/B1_08_PAM
Language:Python
BackofenLab/B1_09_align-msa
Language:Python
BackofenLab/B1_10_tree-UPGMA
Language:Python
BackofenLab/B2_00_intro_to_classroom
Language:Python
BackofenLab/B2_01_hidden_markov_models
Language:Python
BackofenLab/B2_06_BLAST
Language:Python
BackofenLab/B2_10_intro_mapping
Language:Python
BackofenLab/BackofenWeb
Github Pages Repository for the BackofenLab Group Page
Language:TeX
BackofenLab/BioinformaticsI-pages
Language:JavaScript
BackofenLab/BioinformaticsII-pages
Language:JavaScript
BackofenLab/Cherri
Language:Python5 31
BackofenLab/CPSP-tools
Constraint-based Protein Structure Prediction tools.
Language:C++4 1
BackofenLab/LocARNA_consensus_constraint
Language:R
BackofenLab/Long_Range_RNA_Interactions
Genomic long range RNA-RNA interactions in flaviviruses
Language:Python
BackofenLab/V_RNA-pages
Language:JavaScript