Pinned Repositories
cutadapt
cutadapt removes adapter sequences from sequencing reads
KuNG-FU-Database
KuNG FU: a database of KiNase Gene FUsions in cancer cell lines
AGFusion
Python package to annotate and visualize gene fusions.
angular2-torrents
appyter-catalog
A catalog of appyter notebooks
awesome
😎 Awesome lists about all kinds of interesting topics
awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
awesome-R
A curated list of awesome R packages, frameworks and software.
ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
bamcover
Plot graphs of read coverage for BAM files
BadSeby's Repositories
BadSeby/GDC_TCGA
BadSeby/appyter-catalog
A catalog of appyter notebooks
BadSeby/paralog_SL_prediction
Code for prediction of synthetic lethality between paralog pairs
BadSeby/RScriptsDepMap
My R Scripts to process DepMap Files
BadSeby/iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
BadSeby/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
BadSeby/shinyDepMap
A shiny-based web tool for interactive analysis of DepMap data
BadSeby/depmap-analysis
This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"
BadSeby/ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
BadSeby/awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
BadSeby/pcaExplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
BadSeby/ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
BadSeby/IDEA
Interactive Differential Expression Analyzer
BadSeby/KuNG-FU-Database
KuNG FU: a database of KiNase Gene FUsions in cancer cell lines
BadSeby/cpython
The Python programming language
BadSeby/open-cravat
A modular annotation tool for genomic variants
BadSeby/example-voting-app
Example Docker Compose app
BadSeby/ComplexHeatmap
Make Complex Heatmaps
BadSeby/jvarkit
Java utilities for Bioinformatics
BadSeby/s4cmd
Super S3 command line tool
BadSeby/RNA-seq-variant-calling
Functions to call variant in RNA-Seq with Mutect2, Varscan, and Vardict
BadSeby/awesome
😎 Awesome lists about all kinds of interesting topics
BadSeby/iftex
tex engine detection
BadSeby/electron
:electron: Build cross-platform desktop apps with JavaScript, HTML, and CSS
BadSeby/electron-api-demos
Explore the Electron APIs
BadSeby/networkx
Official NetworkX source code repository.
BadSeby/trackViewer.documentation
documentation for trackViewer
BadSeby/splitstackshape
R functions to split concatenated data, conveniently stack columns of data.frames, and conveniently reshape data.frames.
BadSeby/awesome-R
A curated list of awesome R packages, frameworks and software.
BadSeby/KING-REX
Comprehensive kinome NGS targeted expression profiling