This is a Matlab/Octave script for (Latin Hypercube Sampling-Partial Rank Correlation Coefficient) LHS-PRCC uncertainty and sensitivity analysis modified from http://malthus.micro.med.umich.edu/lab/usadata/
- Model_LHS.m (Main file):
A more concise initialization of parameters, variables, and function calling. PRCC.m and PRCC_PLOT.m are called.
The significant parameters and their values are displayed in the Command Window.
- config.txt: Contains parameter & and state variable names for easier indexing and calling.
- PRCCconfig.txt: Contains parameter (minimum, baseline, maximum) and initial state values.
- ODE_LHS.m: ODE function with parameter & variable indexing from config.txt
- loadModel.m: Function to load model from config.txt
- loadPRCCconfig.m: Function to load from PRCCconfig.txt
- extractCharBetween.m: Function to extract substring between two specified characters from a string.
- getHeaderContentIndex.m: Function to get the content index range of a header in a config file.
Further documentation can be accessed from the original source.
- Marino, Simeone & Hogue, Ian & Ray, Christian & Kirschner, Denise. (2008). A Methodology For Performing Global Uncertainty And Sensitivity Analysis In Systems Biology. Journal of Theoretical Biology. 254. 178-196. 10.1016/j.jtbi.2008.04.011.
- http://malthus.micro.med.umich.edu/lab/usadata/