Pinned Repositories
graphRAIN
iMSMS_metabolomics
iMSMS_study
Gut microbiome study in multiple sclerosis
KG_RAG
Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks
PSEV
SARS-CoV-2-molecular-explorer
This repository contains bioinformatic work from my lab in response to the COVID-19 pandemic.
spoke_api_demo
SPOKEsig-Workshop
SPOKEsigs
versa_kg_rag_documentation
Baranzini Lab UCSF's Repositories
BaranziniLab/KG_RAG
Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks
BaranziniLab/graphRAIN
BaranziniLab/PSEV
BaranziniLab/iMSMS_study
Gut microbiome study in multiple sclerosis
BaranziniLab/SPOKEsigs
BaranziniLab/versa_kg_rag_documentation
BaranziniLab/iMSMS_metabolomics
BaranziniLab/SARS-CoV-2-molecular-explorer
This repository contains bioinformatic work from my lab in response to the COVID-19 pandemic.
BaranziniLab/spoke_api_demo
BaranziniLab/SPOKE_NASA_2020
BaranziniLab/SPOKEsig-Workshop
BaranziniLab/SpokeSigv2
BaranziniLab/TANDEM
This repository holds the code for TANDEM model
BaranziniLab/translator_summarization
BaranziniLab/EHR-Ranges
ipynb for generating EHR lab ranges from patient data
BaranziniLab/IMSGC_federated
CLI python scripts for federated analysis
BaranziniLab/metapath_dwpc_analysis
BaranziniLab/PSEV_guides_2
BaranziniLab/PSPG_245B
BaranziniLab/RNAseq_QuantSeq_Fancy
QuantSeq 3'mRNAseq data analysis
BaranziniLab/SPOKE_NASA
BaranziniLab/spoke_network_analysis
BaranziniLab/app_patient_profile_imsms
BaranziniLab/Biothings4SPOKE
BaranziniLab/nasa_spokesig_api
BaranziniLab/Ocrelizumab_vs_rituximab
Repo for LLM
BaranziniLab/RNAseq
RNA-Seq data analysis: whole transcriptome, stranded, dUTP method
BaranziniLab/spoke_35M
BaranziniLab/VANE
Variant Annotation with Network-enhanced Epigenetic data