BarryDigby

Repositories of a fledgling nextflow user.

Galway

Pinned Repositories

barrydigby.github.io
MA5112 MSc Biomedical Genomics
Language:HTML0 1 01
circrna
nf-core/circrna dev
Language:Perl1 1 00
circrna_original
Nextflow pipeline to scan high throughput sequencing data for circRNAs, perform differential expression and generate circRNA-miRNA targets
Language:Perl6 1 00
Cloud_CIX
Documentation for baby clouds
2 3 22
Data-Science-For-Life-Science
CRT outreach program to assist life scientists in learning basic data science skills.
1 1 00
GSE37001
RNA-Seq Analysis - Jeremy Leipzig M6A
Language:Python5 2 01
nf-pcgr
Time to learn DSL2
Language:Nextflow7 2 02
rtp_workshop
Language:Nextflow0 2 40
Youth-Academy
foo....bar
Language:CSS0 2 00
circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Language:Nextflow48 111 6326

BarryDigby's Repositories

BarryDigby/nf-pcgr
Time to learn DSL2
Language:Nextflow7 2 02
BarryDigby/Cloud_CIX
Documentation for baby clouds
2 3 22
BarryDigby/BarryDigby
Language:HTML2 0
BarryDigby/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
BarryDigby/BMC-Genomics-review
Language:TeX1 0
BarryDigby/BMC_circrna
nf-core BMC software article
Language:TeX1 0
BarryDigby/branch_protection
Language:R1 0
BarryDigby/circrna_finder
dockerfile for circRNA finder Westholm et al.
Language:Dockerfile1 0
BarryDigby/circRNA_finder-1
Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
Language:Perl0 0
BarryDigby/CIRIquant
circular RNA quantification tools
Language:Perl0 0
BarryDigby/containers
Bioinformatics containers
Language:Dockerfile0 0
BarryDigby/CRT_workshop
2 0
BarryDigby/dcc
dietrich et al, DCC tool....
Language:Dockerfile1 0
BarryDigby/epi_chap
Language:R2 0
BarryDigby/find_circ
the lads
Language:Dockerfile1 0
BarryDigby/GSE118959
Analysis of GSE118959 circRNAs in LNCaP cell lines
Language:Perl1 0
BarryDigby/healed
Language:Nextflow1 0
BarryDigby/june13-22
Language:R2 0
BarryDigby/MA5112
2023 MA5112
Language:Jupyter Notebook1 01
BarryDigby/misc_scripts
Replaying the greatest hits..
Language:Nextflow1 0
BarryDigby/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow0 0
BarryDigby/multi-package-containers
Testing building mulled containers for multi-requirement tools.
0 0
BarryDigby/pca_network
Analysis of public & local PCa (circRNA, miRNA, mRNA) datasets
Language:R1 0
BarryDigby/pycircdb
final hurdle
Language:Python1 0
BarryDigby/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
Language:Nextflow1 0
BarryDigby/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language:Nextflow1 0
BarryDigby/smrnaseq
A small-RNA sequencing analysis pipeline
Language:Nextflow0 0
BarryDigby/targetscan
TargetScan Container
Language:Dockerfile1 0
BarryDigby/TY_workshop
The return of foobar
2 0
BarryDigby/zeppelin
Conference website
Language:HTML0 0