BaselAbujamous/clust

Issues

• Server Error in '/' Application.

  #69 opened 3 years ago by pekingsci
  1

• How do I control the PDF output to make the x-axis with sample names more readable?

  #83 opened 6 months ago by SchwarzEM
  0

• Segmentation fault on example dataset

  #82 opened 7 months ago by christabel-bucao
  0

• Type conversion errors when reading replicates file

  #76 opened 3 years ago by ijhoskins
  7

• ValueError during concatenation in output.py script

  #81 opened a year ago by SuvratK
  0

• Issue with --no-fil-flat

  #80 opened 2 years ago by lucasinchausti
  0

• AttributeError: Module 'scipy' has no attribute 'random'

  #77 opened 2 years ago by gazalk
  13

• Different number of clusters and genes in each cluster based on the order of samples in Replicates.txt file

  #78 opened 2 years ago by dadrasarmin
  0

• clust not working after installing via bioconda

  #73 opened 3 years ago by ethanjredmond
  1

• Getting error when executing clust

  #72 opened 3 years ago by diego-perojil
  4

• Can this be used with a precomputed distance matrix?

  #71 opened 3 years ago by jolespin
  0

• Color !

  #70 opened 3 years ago by saheljahan
  0

• plot issue

  #35 opened 6 years ago by wangjingshen
  6

• Feature Request - Separate image for each cluster

  #68 opened 3 years ago by sagarutturkar
  0

• Subclustering: inconsistent co-abundance pattern

  #51 opened 5 years ago by MiguelCos
  7

• how to choose a better tight value '-t' ?

  #67 opened 3 years ago by Ruismart
  0

• drastically different results between version 1.8.10 and version 1.12.0

  #64 opened 4 years ago by ereverman
  3

• IndexError: arrays used as indices must be of integer (or boolean) type

  #66 opened 4 years ago by aliceb5
  0

• not able to normalize the expression raw dataset using clust

  #65 opened 4 years ago by vishnurun7
  0

• Unrecognised replicate name (sMEPI_rep1) in line 1 in replicates

  #53 opened 4 years ago by Zefeng-Wu
  1

• NameError: name 'Ds' is not defined

  #54 opened 5 years ago by dsjones552
  3

• Details about how expression values in replicates are collapsed to one (per condition) value

  #63 opened 4 years ago by SamMondal
  1

• Error using replicates files

  #62 opened 4 years ago by anikaliu
  0

• PDF file is missing

  #61 opened 4 years ago by hba151
  0

• ValueError: could not convert string to float

  #60 opened 4 years ago by nat2bee
  2

• MemoryError

  #59 opened 4 years ago by Hamsini-Ray
  1

• Default Y-axis label in plot

  #58 opened 4 years ago by ikar1234
  2

• Order of genes in the output vs the input

  #38 opened 4 years ago by BaselAbujamous
  0

• Smaller and more clusters

  #41 opened 4 years ago by jianhaizhang
  1

• Too many missing genes

  #43 opened 4 years ago by wyim-pgl
  1

• "Error: could not save clusters plots in a PDF file." with more than 11 clusters

  #50 opened 4 years ago by michallipinski
  5

• more_itertools versioning???

  #56 opened 4 years ago by DallasThomas
  1

• error Processed_Data file (normalized data)

  #55 opened 4 years ago by incle440
  0

• TypeError: Cannot cast array from dtype('O') to dtype('float64') according to the rule 'safe'

  #49 opened 5 years ago by maxnest
  2

• Clust 1.10.7 incompatibility issue with Pandas 0.25.0

  #48 opened 5 years ago by adriayumi
  1

• cluster plots in PDF issue

  #40 opened 6 years ago by Wen-Juan
  12

• How to deal with missing data values

  #47 opened 5 years ago by andhartm
  2

• TypeError: Cannot cast array from dtype('O') to dtype('float64') according to the rule 'safe'

  #46 opened 6 years ago by zebrafish-507
  0

• ImportError: No module named numpy

  #45 opened 6 years ago by jianhaizhang
  3

• Too many genes not included in any cluster

  #44 opened 6 years ago by LQHHHHH
  1

• Run command

  #34 opened 6 years ago by jianhaizhang
  4

• plot

  #36 opened 6 years ago by wangjingshen
  1

• Custom normalisation methods

  #33 opened 6 years ago by jianhaizhang
  2

• Unexpected clustering behavior

  #31 opened 6 years ago by taylorreiter
  4

• ValueError: Usecols do not match columns

  #32 opened 6 years ago by jvelotta
  5

• Explain how automatic normalization works

  #26 opened 6 years ago by apcamargo
  2

• Data pre-processing, AttributeError: 'float' object has no attribute 'replace'

  #29 opened 6 years ago by johnsolk
  8

• Log2 fold change nromalization -- help

  #27 opened 6 years ago by bioinfo17
  1

• does not work with missing genes

  #28 opened 6 years ago by ChrisCarrie
  5

• Problems when clustering log-transformed two-colour micro-array data

  #30 opened 6 years ago by emvcaest
  3