Pinned Repositories
AskBeacon
AskBeacon enables researchers and clinicians to query global genomic data resources using natural language to gain insights, analyse and create publication-ready visualisations.
GOANA
GT-Scan2
Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9
GT-scan2-Notebooks
Notebooks for GT-Scan2
hlaTyper
Technical comparison of computational HLA prediction tools from NGS data
methylAltSplicing
Deep learning approach to predict alternative splicing from DNA methylation data.
ngsane
Analysis Framework for Biological Data from High Throughput Experiments
TUSCAN
TUSCAN is a CRISPR-Cas9 target-site activity predictor, which is phenotypic-independent and fast; hence suitable for genome-wide screens.
VariantSpark
VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
VARSCOT
Variant-aware scoring of off-targets for CRISPR Genome Engineering
BauerLab's Repositories
BauerLab/ngsane
Analysis Framework for Biological Data from High Throughput Experiments
BauerLab/VariantSpark
VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
BauerLab/TUSCAN
TUSCAN is a CRISPR-Cas9 target-site activity predictor, which is phenotypic-independent and fast; hence suitable for genome-wide screens.
BauerLab/GT-Scan2
Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9
BauerLab/GT-scan2-Notebooks
Notebooks for GT-Scan2
BauerLab/hlaTyper
Technical comparison of computational HLA prediction tools from NGS data
BauerLab/methylAltSplicing
Deep learning approach to predict alternative splicing from DNA methylation data.
BauerLab/VARSCOT
Variant-aware scoring of off-targets for CRISPR Genome Engineering
BauerLab/GOANA
BauerLab/AskBeacon
AskBeacon enables researchers and clinicians to query global genomic data resources using natural language to gain insights, analyse and create publication-ready visualisations.
BauerLab/BeaconSearchString
Search string generator e.g. for PathBeacon
BauerLab/crispr-chip-notebook
Notebook for Crispr-chip experiments
BauerLab/GOANA_Data
Repository for the GOANA paper
BauerLab/resolvepairs
Resolve pair information for ambiguously named reads when converting SAM to FASTQ