What does this do:

Perform a spatially explicit ABC analysis, running on Open-Science-Grid and using the following simulation resources:

User input

The following input files are defined by the user and should be placed in the input_files folder:

suitability.tif: the suitability geotiff file for representing the landscape:
- NA for representing ocean cells
- 0 for representing continental cells of null suitability and infinite friction
- ]0,1] values for intermediate suitability and frictions
EGG.conf: configuration file for the quetzal-EGG used - unknown parameter values will be rewritten by the ABC pipeline
sample.csv: file mapping sampled gene copies IDS to their latitude longitude sampling points
imap.txt: IMAP file from BPP mapping individuals to putative populations for computing summary statistics

Prior distributions for the demographic scenario are set in the src/DAG/A.condor file.
Number of simulations is set in the src/DAG/generate_DAG.sh file.
The pipeline Directed Acyclic Graph is generated with sh src/DAG/generate_DAG.sh > workflow.dag
The worklow is submitted with condor_submit_dag workflow.dag
Assess the advancement of simulations with condor_watch_q
Once the simulations are done, retrieve:
- summary statistics: sh src/post-analysis/get_sumstats.sh
- parameters table: sh src/post-analysis/get_param_table.sh