Pinned Repositories
16S-pipeline
usearch based 16S community profiling pipeline for analysis of ribosomal amplicon sequencing & analysis
barrelseq
Bacteria & archaea, isolate and simple community RNA-Seq analysis pipeline
chachies
metacsp
Software for analysis of metagenomes and metatranscriptomes from a JGI CSP
Neuralizer
Machine relearning of kinetic and flux models by neural networks
nomelt
Designing high temperature protein sequences via learned language processing
pesticide_community_usearch
16S analysis of pesticide treated soil microbial community, analyzed with usearch pipeline
plasmid_search
PyMolSAR
A Python toolkit to compute molecular features and predict activities and properties of small molecules
USP-inhibition
Cheminformatics models for the design of inhibitors of USP1 enzymes as cancer-fighting agents
BeckResearchLab's Repositories
BeckResearchLab/PyMolSAR
A Python toolkit to compute molecular features and predict activities and properties of small molecules
BeckResearchLab/nomelt
Designing high temperature protein sequences via learned language processing
BeckResearchLab/barrelseq
Bacteria & archaea, isolate and simple community RNA-Seq analysis pipeline
BeckResearchLab/OpenBattery
High performance open source battery
BeckResearchLab/learn2thermDB
Prediction of high temperature stable protein structures approached as a natural language problem
BeckResearchLab/learn2thermML
Machine learning of low and high temperature proteins
BeckResearchLab/5g-python-intro
Intro repository for learning python with 5G rna-seq data
BeckResearchLab/5G_deseq2
BeckResearchLab/ADME-modeling-for-Cargill
A machine learning model to estimate ADMET for non-human targets
BeckResearchLab/Air.jl
Light-weight functional collections and utilities for Julia.
BeckResearchLab/Alfred
BeckResearchLab/BETO_NLP
Repo for working on the NLP project and will try to keep it neat.
BeckResearchLab/codebase_github_actions
Example Python codebase with continuous integration using GitHub actions
BeckResearchLab/detect_plasmid
BeckResearchLab/diff_transformers
BeckResearchLab/entropy
BeckResearchLab/htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
BeckResearchLab/impedance.py
A Python package for working with impedance data
BeckResearchLab/llmao
Combining LLMs with Adverse Outcome Pathway data
BeckResearchLab/min_ion_16s
Prototype tooling for processing 16S full length amplicon data from min ion
BeckResearchLab/odin
Repo for documentation related to the Optical Density Instrument at the Stahl lab
BeckResearchLab/ODIn_dataServer
Host side data logging server for ROGR (OD reporting)
BeckResearchLab/paper_summarizer
Use LangChain to create a pipeline to summarizing academic papers
BeckResearchLab/react-5g-visualization
BeckResearchLab/research-5G-transcriptomic-exploration
BeckResearchLab/SBMLLint
Model checker for the Antimony kinetics modeling lanauge.
BeckResearchLab/taxatree
Workflow for processing a 16s + taxid csv to a phylogenetic tree
BeckResearchLab/Updated_COVID-19_dashboard
BeckResearchLab/UW-Molecular-Data-Mining
Repository for chemical data extraction from literature corpora
BeckResearchLab/vagrant_en
A 3D invariant graph-to-string translation VAE for de novo molecular design