Current version: 0.0.2 == multi-threaded searching
Snow's motif search in C (A simple command-line-tool, expecting to be faster than homer's scanMotifGenome)
Motif searching supporting IUPAC ambiguous codes.
motifSearch -f <FASTA> -m <MOTIF> -p <THREAD> > <OUTPUT-BED>
-f/--fasta fasta file
-m/--motif motif string
-p/--nthreads number of threads
To compile, make && make clean
- stats compare to other methods
- mismatch handling