BenXZhang

AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

bridgestan

BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.

brms_stan

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

MSCSF

The full package for the "multi-scale cardiac simulation framework" in C/C++

PBPK_model_antibody_brain_uptake

PMWebSpec

ProteinMPNN

Code for the ProteinMPNN paper

PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

pytorch_fnet

Three dimensional cross-modal image inference

pytorch_notebooks

🔥 A collection of PyTorch notebooks for learning and practicing deep learning

BenXZhang/AlphaFold3

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

BenXZhang/bridgestan

BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.

BenXZhang/brms_stan

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

BenXZhang/MSCSF

The full package for the "multi-scale cardiac simulation framework" in C/C++

BenXZhang/PBPK_model_antibody_brain_uptake

BenXZhang/PMWebSpec

BenXZhang/ProteinMPNN

Code for the ProteinMPNN paper

BenXZhang/PyRosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

BenXZhang/pytorch_fnet

Three dimensional cross-modal image inference

BenXZhang/pytorch_notebooks

🔥 A collection of PyTorch notebooks for learning and practicing deep learning

BenXZhang/rf_diffusion_all_atom

Public RFDiffusionAA repo

BenXZhang/RFdiffusion

Code for running RFdiffusion

BenXZhang/RoseTTAFold-All-Atom

BenXZhang/stan_gpt-tutorial

BenXZhang/StanCon2023_brms_tutorial

Notebooks and data for StanCon2023 tutorial on BRMS

BenXZhang/stancon_2023_tutorial_hieararchical_modeling

BenXZhang/VT_MAP_Project

BenXZhang/Zhang-et-al-2022-3D-Human-Atrial-Model-with-Tubules

Zhang-et-al-2022-3D-Human-Atrial-Model-with-Tubules