Pinned Repositories
2021Metagenomics
Archive of slurm and shell scripts.
gbs_prism
refactored GBS processing
HybridAssembly
Hybrid Assembly Scripts for Nanopore + Illumina Data
IlluminaAssembly
learnGO
Learning GO for CLUs
melseq_prism
melseq prism
Phyre2BatchPrep
Utility script to prepare batch submission to Phyre2
seq_prisms
Quality control analyses and plots for pools of sequence files
TnSeq
Scripts and Archive for TnSeq Analysis
wgs_prism2
Production and q/c for wgs sequencing runs
BenjaminJPerry's Repositories
BenjaminJPerry/gbs_prism
refactored GBS processing
BenjaminJPerry/HybridAssembly
Hybrid Assembly Scripts for Nanopore + Illumina Data
BenjaminJPerry/melseq_prism
melseq prism
BenjaminJPerry/Phyre2BatchPrep
Utility script to prepare batch submission to Phyre2
BenjaminJPerry/seq_prisms
Quality control analyses and plots for pools of sequence files
BenjaminJPerry/TnSeq
Scripts and Archive for TnSeq Analysis
BenjaminJPerry/wgs_prism2
Production and q/c for wgs sequencing runs
BenjaminJPerry/2021Metagenomics
Archive of slurm and shell scripts.
BenjaminJPerry/IlluminaAssembly
BenjaminJPerry/learnGO
Learning GO for CLUs
BenjaminJPerry/Metagenomics-Index-Correction
BenjaminJPerry/MT-QC
QC of R-MT data
BenjaminJPerry/nanoGuppy
BenjaminJPerry/PhD
Archive of PhD Research
BenjaminJPerry/R-ecology-lesson
Data Analysis and Visualization in R for Ecologists
BenjaminJPerry/RNASeq
Scripts and Archive for RNASeq Analysis
BenjaminJPerry/SMK-GATK
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
BenjaminJPerry/Snakemake-Metagenomics
Snakemake workflow for metagenomic analysis of rumen samples from sheep
BenjaminJPerry/snakemake-tutorial
Working through the snakemake tutorial.
BenjaminJPerry/Struo2-AgR-Tweaks
Tweaks to Struo2 for reproducibility and performance
BenjaminJPerry/viruses
virus stuff
BenjaminJPerry/workflows-snakemake
One-day Snakemake workshop.