Pinned Repositories
2014-06-16-davis
Main repository for the Software Carpentry Workshop at UC Davis on June 16-17 2014
2018_aspp_melbourne_cython
2019-advanced-numpy
Advanced NumPy materials for the 2019 summer school in Canberra.
20191130_ANU
ABC_python
EVM_tools
Some parsers for EVM
NCI_setup_help
Some short explanations on how to set stuff up on NCI for MinION and other long read analysis
Pst_104_E137_A-_genome
This is the shared git repo for the genome analysis of Pst_104E_genome. This was first available as preprint here https://www.biorxiv.org/content/early/2017/09/22/192435 and now published in mBio here https://mbio.asm.org/content/9/1/e02275-17
RainCloudPlots
Code and tutorials to visualise your data that is both beautiful *and* statistically valid
snakemake_recipes
BenjaminSchwessinger's Repositories
BenjaminSchwessinger/EVM_tools
Some parsers for EVM
BenjaminSchwessinger/2014-06-16-davis
Main repository for the Software Carpentry Workshop at UC Davis on June 16-17 2014
BenjaminSchwessinger/2018_aspp_melbourne_cython
BenjaminSchwessinger/ANU2017
BenjaminSchwessinger/ASPP2018
Iterator, generators, toolz and streaming data in ASPP Asia Pacific 2018
BenjaminSchwessinger/aspp_melbourne_numpy
BenjaminSchwessinger/Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
BenjaminSchwessinger/computel
Compute mean telomere length from Whole Genome Sequencing data.
BenjaminSchwessinger/enrichment_seq
repo for enrichment sequencing data analysis
BenjaminSchwessinger/FBD-tutorial
Dating Species Divergences with the Fossilized Birth-Death Process
BenjaminSchwessinger/Gamran
BenjaminSchwessinger/haplotigtools
BenjaminSchwessinger/Introduction-to-BEAST2
This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
BenjaminSchwessinger/memory-melbourne
BenjaminSchwessinger/MinION_data_script
BenjaminSchwessinger/MinION_scripts
BenjaminSchwessinger/nanopolish
Signal-level algorithms for MinION data
BenjaminSchwessinger/PacBio_QC
This is a first attempt on sharing scripts. Not perfect!
BenjaminSchwessinger/parallel-python-aspp-apac
BenjaminSchwessinger/pauvre
pauvre plotting software. originally designed for Oxford Nanopauvre data.
BenjaminSchwessinger/pelita
Actor-based Toolkit for Interactive Language Education in Python
BenjaminSchwessinger/pfb2014
BenjaminSchwessinger/Prior-selection
Prior selection and clock calibration using Influenza A data
BenjaminSchwessinger/protocol.io_MinION_UG
BenjaminSchwessinger/Pst_104E_analysis
BenjaminSchwessinger/python_tools_on_github
Some useful bioinformatics / phylogenetics python code that I've written and sometimes even use
BenjaminSchwessinger/RJ_lab
BenjaminSchwessinger/seaborn_sinaplot
A python implementation of the sinaplot using matplotlib and seaborn
BenjaminSchwessinger/testing_debugging_profiling
Material for the class "Testing, debugging, profiling -- Python tools for building software"
BenjaminSchwessinger/trimmomatic
Read trimming tool for Illumina NGS data.