Department of Bioinformatics - BiGCaT

Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, The Netherlands

Maastricht, The Netherlands

Pinned Repositories

bridgedb-r
R package for BridgeDb
Language:R2 12 194
chem-rdf-model-review
Repository to support a review article about RDF models for chemical entities
2 5 51
literatureSummary
Wikidata SPARQL queries to summarize a corpus of literature
Language:Makefile1 7 00
PathSBML
A PathVisio plugin to import SBML models as SBGN-PD diagrams.
Language:Java4 3 101
pils
Programming In the Life Sciences
Language:HTML11 3 66
PSnpBind-Build
2 1 01
PSnpBind-ML-notebook
Language:Jupyter Notebook5 0 02
raredisease-omim
Language:Groovy3 7 31
Transcriptomics_Metabolomics_Analysis
Automated workflow for Omics integration on IBDs data
Language:Jupyter Notebook2 6 92
wp2lod
Code to convert WikiPathways to RDF.
Language:HTML1 11 51

Department of Bioinformatics - BiGCaT's Repositories

BiGCAT-UM/pils
Programming In the Life Sciences
Language:HTML11 3 66
BiGCAT-UM/PSnpBind-ML-notebook
Language:Jupyter Notebook5 0 02
BiGCAT-UM/Transcriptomics_Metabolomics_Analysis
Automated workflow for Omics integration on IBDs data
Language:Jupyter Notebook2 6 92
BiGCAT-UM/AOP-DB-RDF
Repository containing setup protocol and jupyter notebook for testing
Language:Jupyter Notebook1 4 0
BiGCAT-UM/BiGCaT-Teaching
Department of Bioinformatics - BiGCaT Teaching Materials
1 2 31
BiGCAT-UM/BridgeDbConfig
Language:Java1 4 2
BiGCAT-UM/org.pathvisio.io.bioschemas
Language:Java1 3 10
BiGCAT-UM/PRA3006-SPARQL
This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.
Language:Groovy1 3 20
BiGCAT-UM/SPARQLTutorialBioSB2019
SPARQL workshop organized by BiGCaT Maastricht University
1 7 51
BiGCAT-UM/Transcriptomics_Metabolomics_tutorials
Semi-automated workrflow for functional analysis of transcriptomics and metabolomics data
Language:HTML1 4 0
BiGCAT-UM/website-monitoring
Script and configuration for website monitoring
Language:Shell1 12 101
BiGCAT-UM/BLAST-OER
Open Educational Resource for first year biomedical sciences students into the world of BLAST.
0 4 10
BiGCAT-UM/Transcriptomics_Metabolomics_Analysis_Rshiny
R Shiny application for the multi-omics analysis of inflammatory bowel disease
Language:R0 4 40
BiGCAT-UM/bigcat-um.github.io
Repository to hold the central sitemap.zml
3 0
BiGCAT-UM/BridgeDbR
BIoconductor R package for BridgeDb
Language:R7 0
BiGCAT-UM/ChEMBL-SPARQL-Queries
SPARQL queries for the examples panel in https://chemblmirror.rdf.bigcat-bioinformatics.org
4 0
BiGCAT-UM/IEMPathwayAnalysis
Language:R5 3
BiGCAT-UM/imd-pathway-curation
WikiPathways Curation for just the IMD pathways
Language:Java1 31
BiGCAT-UM/IMD-PUPY
Inherited Metabolic Disorders Systems Biology workflow on Purine, Pyrimidine and Urea Cycle disorders
Language:HTML5 6
BiGCAT-UM/IMD_Curation_Analysis
Inherited Metabolic Disorders (IMDs) queries to curate and analyse pathway models
Language:HTML3 0
BiGCAT-UM/INTOXICOM_Workshop_1
Language:TeX3 0
BiGCAT-UM/KinRDF
Conversion of kinetic data to an RDF model, compatible with WikiPathways PathWayModels
Language:Python3 19
BiGCAT-UM/kubernetes
Webpage about the August 2023 Kubernetes workshop
4 0
BiGCAT-UM/Lipid_Models
Scripts to compare lipids and their related proteins in model species
Language:HTML3 0
BiGCAT-UM/Metagenomics_Metabolomics_Analysis
Language:HTML3 0
BiGCAT-UM/project26-molmedb
Write up of interactions at the ELIXIR BioHackathon Europe 2022 in Project 26.
Language:TeX3 0
BiGCAT-UM/psnpbind-webapp
Language:Java1 0
BiGCAT-UM/PSVD-transcriptomics-workflow
3 0
BiGCAT-UM/qsar-rdf-sbd4nano
Files needed for conversion of nano-QSAR models to RDF
Language:Jupyter Notebook0 0
BiGCAT-UM/WikiPathwaysCurator
Unit tests that validate the WikiPathways content and support the curation of the knowledge base.
Language:Java2 0