Not ready for general use. This is an internal project and is probably not going to work on your machine.
If you use conda, then the environment.yml file should provide an environment with everything and then you can type "make" and, hopefully, everything will compile.
To build the index, run
./build.kmer-ix.sh test.faa
To query the index, run
python query.py test.faa query.faa
- Luis Pedro Coelho
- Longhao Jia (for computing e-values)
License: MIT