BioCogito's Stars
cschin/DCNet
DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
igvteam/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
rust-bio/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
jupyterlab/jupyterlab
JupyterLab computational environment.
broadinstitute/gatk
Official code repository for GATK versions 4 and up
bvieth/powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
storybookjs/storybook
Storybook is the industry standard workshop for building, documenting, and testing UI components in isolation
tensorflow/tensorflow
An Open Source Machine Learning Framework for Everyone
rhiever/python-data-visualization-course
Course materials for teaching data visualization in Python.
kubernetes/kops
Kubernetes Operations (kOps) - Production Grade k8s Installation, Upgrades and Management
neerjad/DataVisualization
Tutorials on visualizing data using python packages like bokeh, plotly, seaborn and igraph
maltman23/ArduTouch
==> ARDUTOUCH KITS ARE AVAILABLE at CornfieldElectronics.com <== ArduTouch is an Arduino-compatible music synthesizer kit with a built-in touch keyboard, and with built-in speaker/amplifier. Build it, and it works! Way low cost (currently $30.) It comes pre-programmed with a music synthesizer (called "Thick") that makes really nice sounds and music and noise. Other diverse synthesizers available at CornfieldElectronics.com . An ArduTouch Arduino library is available for programming in more super nice synthesizer features. The ArduTouch Arduino library comes with many way cool example synthesizer sketches that also serve as a tutorial for making your own ArduTouch synthesizers (which are Arduino sketches). For those who want to learn more, the documentation teaches the basics of Digital Signal Processing for audio generation (with more documentation to come)).
google/sling
SLING - A natural language frame semantics parser
harness/gitness
Gitness is an Open Source developer platform with Source Control management, Continuous Integration and Continuous Delivery.
patzaw/BED
Biological Entity Dictionary (BED)
ay-lab/HiCnv
HiCnv is used to call copy number variations and breakpoints from Hi-C data
zz327/iCNV
iCNV set for bioconductor
jarny/biopyramid
Framework for developing an online genomics application
tonsky/FiraCode
Free monospaced font with programming ligatures
damayanthiHerath/comet
This repository contains the artificats related to development and evaluation of the method:CoMet: A workflow using contig coverage and composition for binning a metagenomic sample with high precision
academic/awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
PapenfussLab/bioshake
Bioinformatics pipelines with Haskell and Shake
PapenfussLab/Canary
A fast and self-contained amplicon pipeline tool.
danielecook/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
auwerxlab/PheWAS
Script used in the manuscript
montilab/pipeliner
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
celery/celery
Distributed Task Queue (development branch)
r78v10a07/trans-annot-notebook
r78v10a07/bioNotebook
nygenome/lancet
Microassembly based somatic variant caller for NGS data