New pipeline needed to annotate tools inside multitool containers
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We have some multitools containers with the following name pattern:
mulled*
These are containers that contains multiple tools. The name of the tools inside the containers can be found here https://github.com/BioContainers/multi-package-containers.
We need a new pipeline that perform the following operations:
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Go to Github https://github.com/BioContainers/multi-package-containers/tree/master/combinations read all the files started with mulled prefrix.
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Check if the mulled package with that name exist into our mongoDB database.
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If the mulled package is there, annotated the tool and the version tool that is contains the following corrsponding tools in the mulled recipe for example:
r-scales=0.5.0,bioconductor-cardinal=1.12.1,r-kernsmooth=2.23_15,r-ggplot2=2.2.1,r-pheatmap=1.0.8,r-gridextra=2.2.1,r-rcolorbrewer=1.1_2