ga4gh
There are 71 repositories under ga4gh topic.
broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
ga4gh/benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
ohsu-comp-bio/funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
ga4gh/ga4gh-server
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
ga4gh/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
phenopackets/phenopacket-schema
Repository for the GA4GH phenopacket schema
ga4gh/vrs-python
GA4GH Variation Representation Python Implementation
elixir-cloud-aai/TESK
GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
ga4gh-beacon/specification
GA4GH Beacon specification.
ga4gh/tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
EGA-archive/crypt4gh
GA4GH cryptographic tools
monarch-initiative/phenopacket-store
Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
elixir-cloud-aai/cwl-WES
Trigger CWL workflows via GA4GH WES and TES
phenopackets/phenopacket-tools
An app and library for building, conversion, and validation of GA4GH Phenopackets.
ga4gh/pedigree
Repository for the family history/pedigree project
BD2KGenomics/bioapi-examples
Code examples for working with web based bioinformatics APIs
ga4gh/cloud-interop-testing
Interoperable execution of workflows using GA4GH APIs
CSCfi/beacon-python
Python-based GA4GH Beacon API Server
elixir-cloud-aai/proTES
Proxy service for injecting middleware into GA4GH TES requests
neicnordic/crypt4gh
Crypt4GH standard implementation
elixir-cloud-aai/tesk-api
GA4GH TES API Service that translates tasks into Kubernetes Batch API calls
ga4gh-beacon/ga4gh-beacon-legacy-website
Website of ELIXIR Beacon - A GA4GH Driver Project
ga4gh/refget-compliance-suite
Repository for the Google Summer of Code for the Reference Retrieval API
elixir-cloud-aai/web-components
GA4GH Web components are the reusable custom elements that can be utilized in your web apps & web pages independently irrespective of what framework/library you are using to build the frontend.
CSCfi/beacon-network
Beacon Network APIs
EGA-archive/crypt4gh-rust
Rust implementation for the Crypt4GH encryption format
andrewyatz/refget-server-python
An implementation of the Refget v2.0.0 standard using Python
CNAG-Biomedical-Informatics/pheno-ranker
Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2.
ga4gh-metadata/metadata-schemas
Schema definitions for the Global Alliance for Genomics and Health non-sequence objects
ga4gh/tool-registry-validator
Used to validate APIs that implement https://github.com/ga4gh/tool-registry-schemas
stjude-rust-labs/tes
A crate for working with the Task Execution Service (TES) specification.
Barski-lab/ga4gh_challenge
Workflow for GA4GH/DREAM challenge (phase 2)
BioContainers/biocontainers-backend
Python backend for Biocontainers (Flask + MongoDB)
elixir-cloud-aai/proWES
Proxy service for injecting middleware into GA4GH WES requests
ga4gh-beacon/specification-v2
GA4GH Beacon v2 specification.
elixir-cloud-aai/elixir-cloud-aai.github.io
Documentation for the ELIXIR::GA4GH Cloud