Pinned Repositories
BioData-Club.github.io
BioData Club website and project management
dataDonutsJeffLeek
Repository for discussing How to be a modern scientist
diy-documentation
A BioData Club Workshop on Markdown and Read the Docs.
Friendly-Intro-to-R
Danielle and Lilly teach a v friendly intro to R and R Studio.
ghpages-rtd
The ReadTheDocs version of the BioData Club's GitHub Pages Tutorial
githubPagesTutorial
Tutorial on Setting Up a Github Page
latex-course
An interactive introduction to LaTeX using Overleaf.
logregression-workshop
In biomedical research we often wish to classify data into two or more groups (eg. healthy and diseased) based on a variety of measurement variables, but how do you determine if the model you’ve selected is good? In this BioData Club workshop instructor Crista Moreno will discuss the mathematics of logistic regression for binary classification modeling, and how to prevent the harms of overfitting with cross validation in R. Attendees will gain knowledge through hands-on exercises about the following concepts and data science skills. Logistic regression (logit function, probability, binary classification) Overfitting (adding parameters and high dimensional spaces) Cross validation Cross validation Error R (R markdown, R packages magrittr, dplyr, ggplot2, tidyr, corrplot, caret, rgl) Anyone with interest in building a classification model for biomedical data is encouraged to attend! Prior experience with R, Rstudio, and a basic knowledge of classification modeling (also mathematical functions) will be helpful, but is not a requirement.
obo-tutorial
A tutorial on using Open Biological and Biomedical Ontologies (OBO) to create better biodata
programming-fundamentals
Programming fundamentals lesson based on the Software Carpentry Programming with Python lesson.
BioData Club's Repositories
BioData-Club/BioData-Club.github.io
BioData Club website and project management
BioData-Club/githubPagesTutorial
Tutorial on Setting Up a Github Page
BioData-Club/Friendly-Intro-to-R
Danielle and Lilly teach a v friendly intro to R and R Studio.
BioData-Club/dataDonutsJeffLeek
Repository for discussing How to be a modern scientist
BioData-Club/logregression-workshop
In biomedical research we often wish to classify data into two or more groups (eg. healthy and diseased) based on a variety of measurement variables, but how do you determine if the model you’ve selected is good? In this BioData Club workshop instructor Crista Moreno will discuss the mathematics of logistic regression for binary classification modeling, and how to prevent the harms of overfitting with cross validation in R. Attendees will gain knowledge through hands-on exercises about the following concepts and data science skills. Logistic regression (logit function, probability, binary classification) Overfitting (adding parameters and high dimensional spaces) Cross validation Cross validation Error R (R markdown, R packages magrittr, dplyr, ggplot2, tidyr, corrplot, caret, rgl) Anyone with interest in building a classification model for biomedical data is encouraged to attend! Prior experience with R, Rstudio, and a basic knowledge of classification modeling (also mathematical functions) will be helpful, but is not a requirement.
BioData-Club/diy-documentation
A BioData Club Workshop on Markdown and Read the Docs.
BioData-Club/ghpages-rtd
The ReadTheDocs version of the BioData Club's GitHub Pages Tutorial
BioData-Club/latex-course
An interactive introduction to LaTeX using Overleaf.
BioData-Club/obo-tutorial
A tutorial on using Open Biological and Biomedical Ontologies (OBO) to create better biodata
BioData-Club/programming-fundamentals
Programming fundamentals lesson based on the Software Carpentry Programming with Python lesson.
BioData-Club/BioDataIntroDataVizSlides
Slides for Intro to Data Viz workshop
BioData-Club/data_donuts_af_am_history
BioData-Club/data_storytelling_bdc
Data Storytelling Workshop for BioData Club
BioData-Club/gradual_shiny
Workshop introducing Shiny programming concepts
BioData-Club/introduction-git
marp slides and material for git talk
BioData-Club/jekyll-academic
Live GitHub Page at
BioData-Club/my-first-rtd
A sample repository for use in the BioData Club DIY Documentation Workshop
BioData-Club/nhanes_explore
Shiny App for Exploring the NHANES dataset
BioData-Club/sql_workshop
BioData-Club/TableauWorkshop
Repository for Tableau Workshop at OHSU
BioData-Club/webscraping_workshop
A Jupyter Notebook-based workshop on web scraping in python
BioData-Club/Workshop_ReproduciblePaper
A Practical Guide to Reproducible Papers