BioDepot

Pinned Repositories

BioDepot-workflow-builder
:computer: GUI for creating bioinformatics workflows from :whale: Docker containers:
Language:Python64 12 2321
fiji-clij
Fiji with GPU functionality
Language:Python2 3 11
fiji-demo
Language:Python3 8 10
GUIdock-VNC
Language:JavaScript13 6 27
GUIdock-X11
Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)
Language:Shell5 5 02
LINCS_RNAseq_cpp
Optimized tools for barcoded RNA-seq
Language:C2 3 02
nanopore-gpu
Language:Python5 3 01
nbdocker
A Jupyter Notebook extension for Docker
Language:JavaScript15 6 15
RNA-seq-lambda
Rapid RNA-seq pipeline using AWS lambda functions for alignment
Language:Python13 3 02
TaskPerform_AWSLambda
Computational tasks performance in parallel using AWS Lambda and example
Language:Python5 10 01

BioDepot's Repositories

BioDepot/BioDepot-workflow-builder
:computer: GUI for creating bioinformatics workflows from :whale: Docker containers:
Language:Python64 12 2321
BioDepot/nbdocker
A Jupyter Notebook extension for Docker
Language:JavaScript15 6 15
BioDepot/GUIdock-VNC
Language:JavaScript13 6 27
BioDepot/RNA-seq-lambda
Rapid RNA-seq pipeline using AWS lambda functions for alignment
Language:Python13 3 02
BioDepot/nanopore-gpu
Language:Python5 3 01
BioDepot/TaskPerform_AWSLambda
Computational tasks performance in parallel using AWS Lambda and example
Language:Python5 10 01
BioDepot/fiji-demo
Language:Python3 8 10
BioDepot/fiji-clij
Fiji with GPU functionality
Language:Python2 3 11
BioDepot/LINCS_RNAseq_cpp
Optimized tools for barcoded RNA-seq
Language:C2 3 02
BioDepot/ubuntu-star
Minimal Ubuntu container with STAR aligner
Language:Shell2 3 00
BioDepot/biodepot-launcher
Language:JavaScript1 3 0
BioDepot/GDC_Genomic_Workflows
Language:C1 3 00
BioDepot/Hotstarting-For-STAR-Alignment
A hot-starting method for STAR Alignment.
Language:Shell1 3 01
BioDepot/LINCS_RNAseq_cpp_old
Optimized software for barcoded Unique Molecular Identifier (UMI) RNAseq
Language:C++1 3 0
BioDepot/MorphicConsortiumWebSite
https://elijah1368.github.io/MorphicConsortium/
Language:CSS1 0 0
BioDepot/serverless-UMI
Language:C++0 3 11
BioDepot/aws-s3-explorer
Customized version of aws-s3-explorer
Language:JavaScript2 0
BioDepot/downloadURL-bwbWidgetImage
Docker image for Bwb downloadURL widget
Language:Shell
BioDepot/dtoxs_alignment
Language:R4 0
BioDepot/dtoxs_analysis
Docker image for Differential Expression Analysis on DToxS Data
Language:R4 0
BioDepot/kallisto-sam
Modified kallisto that outputs sam lines to stdout instead of tsv and pseudobam files
Language:C3 0
BioDepot/L1kpp
Faster more accurate processing of LINCS L1000 data
Language:HTML
BioDepot/nanopore-public
Language:Python
BioDepot/nanopore-public-workflows
Language:Python
BioDepot/smith-waterman-serverless
Serverless implementation of Smith-Waterman on all-vs-all human protein set
BioDepot/sratoolkit
Docker image for sratoolkit
Language:Perl3 0
BioDepot/star
Star aligner container with wrapper for quantification
BioDepot/Workflow-repository
A collection of containerized workflows for the BioDepot-Workflow-Builder
Language:C
BioDepot/workflows
Language:C3 0
BioDepot/workflows-gitpod
Language:Python3 0