Export data from the BIA to feed static pages, and other downstream consumers. This:
- Pulls data from the BIA Integrator API
- Selects attributes for images and studies
- Derives information from OME-Zarr representations (physical dimensions, axis sizes)
- Transforms to a specific export format
- Writes the result to a JSON file
Note that the export process caches results, so be careful!
- Clone the repository.
- Run
poetry install
Copy template.env to .env.
Run:
poetry run bia-export
This will, by default, create bia-export.json.