Pinned Repositories
baysor-nextflow-module
Nextflow module to use Baysor for cell segmentation in imaging-based Spatial Transcriptomics
containers
iss-nf
Reusable in-situ sequencing analysis workflow orchestrated by Nextflow
nextflow-modules
nf-core-compatible modules for Nextflow
ngff-transformations
ome-zarr-examples
Collection of ome-zarr structures, for testing different NGFF validators
ome-zarr-image-analysis-nextflow
Basic example of using OME-Zarr in a Nextflow pipeline
single-file-ome-ngff
test-datasets
zarr-chunk-benchmarking
2024 OME-Zarr Hackathon project for benchmarking read performance of chunk sizing on different storage environments
BioImageTools's Repositories
BioImageTools/ome-zarr-image-analysis-nextflow
Basic example of using OME-Zarr in a Nextflow pipeline
BioImageTools/ngff-transformations
BioImageTools/containers
BioImageTools/iss-nf
Reusable in-situ sequencing analysis workflow orchestrated by Nextflow
BioImageTools/baysor-nextflow-module
Nextflow module to use Baysor for cell segmentation in imaging-based Spatial Transcriptomics
BioImageTools/nextflow-modules
nf-core-compatible modules for Nextflow
BioImageTools/zarr-chunk-benchmarking
2024 OME-Zarr Hackathon project for benchmarking read performance of chunk sizing on different storage environments
BioImageTools/ome-zarr-examples
Collection of ome-zarr structures, for testing different NGFF validators
BioImageTools/single-file-ome-ngff
BioImageTools/test-datasets
BioImageTools/.github
BioImageTools/ome-zarr-fiji-java
A drag-and-drop gateway of OME-Zarrs into Fiji.
BioImageTools/ome-zarr-parallel-write
ome-zarr-parallel-write outcome @ OME-NGFF workflow hackathon