Pinned Repositories
alpine_cc2023
AncSEqAlign
ascertainmentBiasSim
bamtovcf
bioconda-recipes
Conda recipes for the bioconda channel.
calcFWH
cpp script to calculate tajimas D, FWH, theta, pi, segregating sites
fastqtobam
pipeline in progress to process and align the raw fast files against the use-provided reference
scalepopgen_v0
StatsGenomeWindow
This repository contains all the scripts I used to extract heterozygosity and depth information in windows across the genome
trivial-python-scripts
python scripts for day-to-day use
BioInf2305's Repositories
BioInf2305/StatsGenomeWindow
This repository contains all the scripts I used to extract heterozygosity and depth information in windows across the genome
BioInf2305/bamtovcf
BioInf2305/fastqtobam
pipeline in progress to process and align the raw fast files against the use-provided reference
BioInf2305/scalepopgen_v0
BioInf2305/trivial-python-scripts
python scripts for day-to-day use
BioInf2305/alpine_cc2023
BioInf2305/AncSEqAlign
BioInf2305/ascertainmentBiasSim
BioInf2305/bioconda-recipes
Conda recipes for the bioconda channel.
BioInf2305/calcFWH
cpp script to calculate tajimas D, FWH, theta, pi, segregating sites
BioInf2305/CLDLA-pipeline
BioInf2305/create-gvcf
BioInf2305/docker_scripts
BioInf2305/fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
BioInf2305/fqgrep-in-progress
BioInf2305/hapibd-pytools
python script to analyze output files of hapibd
BioInf2305/intro2docker
Basic Docker exercises with CodeSpaces
BioInf2305/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
BioInf2305/nf-core-vcffilter
BioInf2305/pandas-learning
repository to learn pandas
BioInf2305/rtd-tutorial
BioInf2305/scalepopgen-cli
BioInf2305/scalepopgen-cli_v0
BioInf2305/scalepopgen_doc
BioInf2305/scalepopgen_results
BioInf2305/SIB_course_nextflow_Nov_2021
Nextflow course 2021
BioInf2305/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
BioInf2305/test-datasets
Test data to be used for automated testing with the nf-core pipelines
BioInf2305/VariantCalling
This repository contains all the codes to perform the variant calling in parallel using GATK haplotype caller and bcftools mpileup
BioInf2305/WGSAlignmentScripts