BioPandas/biopandas

Unnecessary source code in a tutorial

igorsdub opened this issue · 1 comments

Describe the documentation issue

A little issue with a PDB tutorial on the BioPandas website. Unnecessary code lines is present at the beginning of the tutorial:

import pandas as pd
import numpy as np
import sys
import gzip
from warnings import warn
try:
    from urllib.request import urlopen
    from urllib.error import HTTPError, URLError
except ImportError:
    from urllib2 import urlopen, HTTPError, URLError  # Python 2.7 compatible
from biopandas.pdb.engines import pdb_records
from biopandas.pdb.engines import pdb_df_columns
from biopandas.pdb.engines import amino3to1dict
import warnings
from distutils.version import LooseVersion



class PandasPdb(object):
    """
    Object for working with Protein Databank structure files.

...

    def parse_sse(self):
        """Parse secondary structure elements"""

ppdb = PandasPdb().fetch_pdb('3eiy')
ppdb.df

Suggest a potential improvement or addition

Delete the PandasPdb class source code from this section.

Thank you!

rasbt commented

Ooops, good catch. Must have left it in there by accident. Should be fixed now. Thanks!