pdb
There are 331 repositories under pdb topic.
icsharpcode/ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata (&more) - cross-platform!
inducer/pudb
Full-screen console debugger for Python
pdbpp/pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger)
crosire/blink
A tool which allows you to edit source code of any MSVC C++ project live at runtime
ajkhoury/ReClassEx
ReClassEx
spiside/pdb-tutorial
A simple tutorial about effectively using pdb
BradyAJohnston/MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
horsicq/PDBRipper
PDBRipper is a utility for extract an information from PDB-files.
plasma-umass/ChatDBG
ChatDBG - AI-assisted debugging. Uses AI to answer 'why'
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
sakhnik/nvim-gdb
Neovim thin wrapper for GDB, LLDB, PDB/PDB++ and BashDB
biojava/biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
mdtraj/mdtraj
An open library for the analysis of molecular dynamics trajectories
Mixaill/FakePDB
Tool for PDB generation from IDA Pro database
charnley/rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
pharmai/plip
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
haddocking/pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
getsentry/pdb
A parser for Microsoft PDB (Program Database) debugging information
cansarigol/pdbr
pdb + Rich library
ergrelet/windiff
Web-based tool that allows comparing symbol, type and syscall information of Microsoft Windows binaries across different versions of the OS.
williamgilpin/pypdb
A Python API for the RCSB Protein Data Bank (PDB)
ergrelet/resym
Cross-platform tool that allows browsing and extracting C and C++ type declarations from PDB files.
ionelmc/python-remote-pdb
Remote vanilla PDB (over TCP sockets).
jasonwhite/ducible
A tool to make Windows builds reproducible. (UNMAINTAINED)
bioSyntax/bioSyntax
Syntax highlighting for computational biology
kmaork/madbg
A fully-featured remote and preemptive debugger for python
rdk/p2rank
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
HoShiMin/formatPE
A bunch of parsers for PE and PDB formats in C++
gotcha/vimpdb
Pdb and Vim integration
nblock/pdb-cheatsheet
A cheatsheet for the Python Debugger (pdb)
PDB-REDO/dssp
Application to assign secondary structure to proteins
mmagnus/rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
zouxianyu/query-pdb
query-pdb is a server-side software for parsing PDB files. The software provides PDB online parsing service.
p0dalirius/pdbdownload
A Python script to download PDB files associated with a Portable Executable (PE)
LucaAngioloni/ProteinSecondaryStructure-CNN
Protein Secondary Structure predictor using Convolutional Neural Networks
mittinatten/freesasa
C-library for calculating Solvent Accessible Surface Areas