haddocking/pdb-tools

Issues

• How to add insertion codes on PDB

  #165 opened 7 months ago by Sofia-FR
  1

• pdb_selaltloc removes residues with (only) alternate locations

  #153 opened 2 years ago by mgiulini
  22

• pdb_selb

  #163 opened 10 months ago by amjjbonvin
  0

• pdb_merge not adding END statement

  #149 opened 10 months ago by amjjbonvin
  1

• `pdb_tidy` removes the `TER` record between chains and removes last `ENDMDL` in a multi-model PDB

  #155 opened 2 years ago by rvhonorato
  8

• pdb_tidy discards ENDMDL statements for HETATM ensembles

  #160 opened a year ago by amjjbonvin
  0

• pdb_merge should discard MODEL/ENDMDL statements

  #159 opened a year ago by amjjbonvin
  0

• Question on `pdb_keepcoord`

  #152 opened 2 years ago by joaomcteixeira
  4

• pdb_mkensemble includes the PDB filename when using a redirect

  #146 opened 2 years ago by amjjbonvin
  6

• pdb_fixinsert can't handle the PDB, which has missing residue in insertion code region

  #148 opened 2 years ago by hw-protein
  3

• Improve `pdb_mkensemble` to work as lib

  #147 opened 2 years ago by joaomcteixeira
  0

• Implement `pdb_selmodel`

  #122 opened 3 years ago by rvhonorato
  1

• Better naming of pdb_tofasta entries

  #123 opened 3 years ago by sbliven
  2

• `ValueError: invalid literal for int() with base 10: '?'` when handling `HETATM`

  #126 opened 3 years ago by multimeric
  7

• `pdb_fixinsert` and its impact on numbering

  #110 opened 3 years ago by aanastasiou
  3

• Issue with doctools.py

  #111 opened 3 years ago by andrewsb8
  6

• Behaviour of `pdb_selres`

  #116 opened 3 years ago by TianyiShi2001
  3

• Possible bug in Molprobity

  #125 opened 3 years ago by Mr-MOPAC
  4

• Development suggestion: Behaviour of pdb_reres and pdb_shiftres

  #133 opened 3 years ago by KasperBuskPedersen
  3

• Help with badly formatted PDB file

  #134 opened 3 years ago by LilySnow
  3

• Migrate to GitHub Actions

  #100 opened 3 years ago by joaomcteixeira
  1

• Bug in the `pdb-tools` website

  #128 opened 3 years ago by joaomcteixeira
  3

• `pdb_wc` should report the list of chain IDs of the PDB

  #135 opened 3 years ago by joaomcteixeira
  0

• `pdb_fetch` could return `.cif` if the `.pdb` is not available

  #124 opened 3 years ago by rvhonorato
  3

• Add option to pdb_tidy to only add TER between different chains

  #101 opened 3 years ago by amjjbonvin
  3

• `pdb_rplresname` should accept several substitutions maps

  #120 opened 3 years ago by joaomcteixeira
  1

• `pdb_selaltloc` is breaking with ANISOU lines for `7K2U.pdb`

  #130 opened 3 years ago by joaomcteixeira
  0

• improve `pdb_wc` when using as library.

  #127 opened 3 years ago by joaomcteixeira
  0

• Behaviour in `selaltloc`

  #115 opened 3 years ago by joaomcteixeira
  1

• `pdb_tidy` does not correct `MODEL` records

  #118 opened 3 years ago by rvhonorato
  1

• Consider HEXADECIMAL for `pdb_fromcif`

  #121 opened 3 years ago by joaomcteixeira
  1

• Using pdb-tools as a lib (also)

  #106 opened 3 years ago by joaomcteixeira
  0

• New tools for protein, nucleic, carbo, ligands

  #105 opened 3 years ago by joaomcteixeira
  6

• molprobity.py gives a TypeError

  #104 opened 4 years ago by jbibbe4
  2

• sub commands?

  #102 opened 4 years ago by jyesselm
  18

• pdb_selatlloc fails on single locs

  #90 opened 4 years ago by joaomcteixeira
  1

• Improve documentation updates

  #82 opened 4 years ago by JoaoRodrigues
  1

• pdb_delinsertion - naming is confusing

  #91 opened 4 years ago by amjjbonvin
  0

• pip install does not install LICENSE file

  #93 opened 4 years ago by Gerardwx
  7

• Coot can't open the output file of pdb_merge

  #94 opened 4 years ago by 1ut
  2

• Chain selection should be case-sensitive

  #88 opened 4 years ago by JoaoRodrigues
  1

• Add chain IDs on missing chains with TER

  #70 opened 4 years ago by joaomcteixeira
  9

• input PDB file

  #73 opened 4 years ago by fedeserral
  2

• pdb-deinsertion renumbers chains without insertion codes

  #67 opened 4 years ago by joelbard
  7

• pdb_reatom misaligning with TER lines

  #79 opened 4 years ago by edarl
  3

• Adds numbers to equal atom names in HETATM entries

  #71 opened 4 years ago by joaomcteixeira
  6

• Handling CONECT entries

  #72 opened 4 years ago by joaomcteixeira
  4

• pdb_reres removes the MODEL tag from multi-model PDB files

  #68 opened 4 years ago by PhilippJunk
  4

• Code improvement following sonarcloud.io standards

  #66 opened 5 years ago by mtrellet
  1

• A rare case for pdb_delinsertion

  #64 opened 5 years ago by joaomcteixeira
  2