rvhonorato
Research Software Engineer with a PhD in Bioinformatics working with Structural Computational Biology, web technologies and everything in between
@UtrechtUniversityUtrecht, Netherlands
Pinned Repositories
gdock
Protein-Protein Docking using Genetic Algorithm
haddock-restraints
Generate restraints to be used in HADDOCK
haddock3
Official repo of the modular BioExcel version of HADDOCK
haddock3-webapp
Web app which is front-end for bartender and wraps workflow builder with haddock3 catalog
3D-DART
Standalone code for 3D-DART (originally developed by Marc van Dijk)
alphafold-hpc-wrapper
AlphaFold-wrapper for small HPC
cazy-parser
A way to extract specific information from CAZy
cealign
Implementation of the Combinatorial Extension (cealign) algorithm to align protein structures
jobd
A lightweight Golang REST API daemon for seamless file transfer and job management in containerized research software environments.
remotesysmonitor
A simple CLI to perform checks in your servers
rvhonorato's Repositories
rvhonorato/cazy-parser
A way to extract specific information from CAZy
rvhonorato/remotesysmonitor
A simple CLI to perform checks in your servers
rvhonorato/alphafold-hpc-wrapper
AlphaFold-wrapper for small HPC
rvhonorato/cealign
Implementation of the Combinatorial Extension (cealign) algorithm to align protein structures
rvhonorato/arctic3d
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
rvhonorato/cport
Source code for CPORT
rvhonorato/FANDAS_2.0
rvhonorato/gitignore
A collection of useful .gitignore templates
rvhonorato/jobd
A lightweight Golang REST API daemon for seamless file transfer and job management in containerized research software environments.
rvhonorato/aoc2024
Solutions to the Advent of Code 2024
rvhonorato/ashell
A ready to go Wayland status bar for Hyprland
rvhonorato/CDpal
This software is used to analyze protein thermal and chemical stability data monitored by CD or fluorescence spectroscopy.
rvhonorato/CSpred
UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine learning module that makes predictions from features extracted from the 3D structures of the proteins.
rvhonorato/fcc-wasm
rvhonorato/freesasa-rs
A rust crate to interface with the freesasa library for protein surface area calculations
rvhonorato/freesasa-sys
rvhonorato/go-gentbl
rvhonorato/gomailer
A simple CLI to send templated e-mails
rvhonorato/haddock-restraints
Generate restraints to be used in HADDOCK
rvhonorato/haddocking.github.io
Webpage of the HADDOCK group
rvhonorato/pdb-handler
rvhonorato/pdbtbx
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
rvhonorato/prodigy-cryst
Contacts-based classifier of biological and crystallographic interfaces
rvhonorato/python-ihm
Python package for handling IHM mmCIF and BinaryCIF files
rvhonorato/RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
rvhonorato/rustlings
:crab: Small exercises to get you used to reading and writing Rust code!
rvhonorato/RustSASA
A Rust library for calculating the SASA/ASA for each atom in a protein. Based on the Shrake & Rupley algorithm.
rvhonorato/rvhonorato
rvhonorato/unmr-nl
website for the unmr-nl facility
rvhonorato/workflow_template
Use Case I - workflow