rdk/p2rank

Issues

• exception in phase 'semantic analysis' in source unit

  #75 opened 3 months ago by veronicagamo
  2

• Rescoring of cif files generated by fpocket fails

  #72 opened 4 months ago by Yorick-126
  11

• hyperparameter optimization tutorial

  #28 opened 6 months ago by skodapetr
  3

• Pocket Volume Estimations

  #68 opened a year ago by apl22
  2

• installation not clear?

  #56 opened 6 months ago by debarati31
  13

• Issue with loading mmCIF files created in PyMOL

  #54 opened 6 months ago by davidhoksza
  4

• Fail or at least warn users if they try to use wrong combiation of (command,config,model)

  #73 opened 6 months ago by rdk
  0

• data input rescore

  #69 opened 10 months ago by ClaraVanM
  7

• Out of memory error

  #55 opened 9 months ago by AndreaSoltes
  1

• incomplete test_output

  #71 opened 9 months ago by SusuSui
  4

• Different results compared to PrankWeb?

  #70 opened 9 months ago by AlexLam37
  1

• Make p2rank behave more like a standard unix program by default (wrt output location and working directory)

  #45 opened 4 years ago by rdk
  3

• Question about the preprocessing of PDB file.

  #65 opened 10 months ago by violet-sto
  1

• installation not clear

  #67 opened a year ago by Canddya
  0

• File path in *.ds file

  #58 opened a year ago by JinyuanSun
  3

• [SUGGESTION] Release Binary Should Log To STDERR instead of to install directory

  #59 opened 2 years ago by lilleswing
  1

• No CSV output?

  #63 opened 2 years ago by lazear
  7

• No SLF4J providers were found!

  #62 opened 2 years ago by amarye
  5

• Dataset contains invalid files

  #61 opened 2 years ago by amarye
  2

• dataset-joined pdb_residues file doesn`t match with fasta sequence

  #57 opened 3 years ago by ProkopDivin
  0

• easy way to get features

  #53 opened 3 years ago by rohanvarm
  2

• Add README section about running dockerized version

  #42 opened 4 years ago by davidhoksza
  0

• Any idea why there is a difference?

  #43 opened 4 years ago by skodapetr
  0

• Add README section abut P2Rank framework

  #47 opened 4 years ago by rdk
  0

• Extend and reorganize documentation

  #48 opened 4 years ago by rdk
  0

• Building on WSL failing

  #52 opened 3 years ago by davidhoksza
  2

• Spearmint and Python 3

  #19 opened 3 years ago by skodapetr
  1

• Output directory parameter `-o` is sometimes ignored.

  #50 opened 4 years ago by rdk
  1

• failFast for conservation

  #37 opened 4 years ago by skodapetr
  1

• Bug in -conservation_dirs argument parsing

  #49 opened 4 years ago by davidjakubec
  2

• Improve behaviour - wrong parameters

  #36 opened 4 years ago by sykoram
  2

• Improve error message

  #18 opened 4 years ago by skodapetr
  1

• IndexOutOfBoundsException when loading PDB file

  #20 opened 4 years ago by skodapetr
  3

• Feature implementation not found: conserv

  #38 opened 4 years ago by skodapetr
  3

• Does p2rank require git ?

  #41 opened 4 years ago by skodapetr
  1

• How to train with conservation (Add parameter -conservation_dir_train)

  #33 opened 4 years ago by skodapetr
  5

• Add probability to output *_predictions.csv file

  #46 opened 4 years ago by rdk
  1

• ResidueNumberWrapper ignore chain ?

  #35 opened 4 years ago by skodapetr
  3

• What is a huge dataset?

  #24 opened 4 years ago by skodapetr
  1

• Java options unrecognized by OpenJDK 15

  #44 opened 4 years ago by davidhoksza
  1

• What are best practices to generating docking gridboxes from P2R points?

  #40 opened 4 years ago by 5xx7xx
  2

• Log output change

  #39 opened 4 years ago by skodapetr
  2

• How does predict-eval work

  #30 opened 5 years ago by skodapetr
  4

• exception: Not enough training instances with class labels

  #21 opened 5 years ago by skodapetr
  3

• Invalid format and content of runs_pred.csv

  #29 opened 5 years ago by skodapetr
  0

• Thread count limitation

  #31 opened 5 years ago by skodapetr
  3

• Fpocket in tutorial

  #25 opened 5 years ago by skodapetr
  1

• Note should not be in the text

  #27 opened 5 years ago by skodapetr
  1

• Case-study to extra file

  #26 opened 5 years ago by skodapetr
  1

• PyMOL output file names are not quoted

  #22 opened 5 years ago by davidhoksza
  1