pymol
There are 104 repositories under pymol topic.
rdk/p2rank
P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
cgohlke/pymol-open-source-wheels
Pymol-open-source wheels for Python on Windows.
cbalbin-bio/pymol-color-alphafold
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
pymodproject/pymod
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
MooersLab/pymolshortcuts
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
BGI-SynBio/PyMOL-PUB
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
paiardin/DockingPie
A Consensus Docking Plugin for PyMOL
Valdes-Tresanco-MS/AMDock
(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
Valdes-Tresanco-MS/AMDock-win
(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
ding-lab/hotspot3d
3D hotspot mutation proximity analysis tool
MooersLab/pymolsnips
Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.
smutao/PyVibMS
A PyMOL plugin for visualizing vibrations in molecules and solids
liyigerry/gmx
molecular dynamics simulation and analysis. 分子动力学模拟和分析。
wrf/pdbcolor
Python code to color a PDB structure based on parameters from a multiple sequence alignment
patonlab/wSterimol
Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents
ferritin-bio/ferritin
protein utilities in Rust
matteoferla/MichelaNGLo-app
A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site
BioComputingUP/ring-pymol
This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
insilichem/esigen
:memo::sparkles: Generate supporting information documents for your computational chemistry manuscripts - Documentation: https://esigen.readthedocs.io
smsaladi/pymol_viridis
Colorblind-friendly, perceptually uniform palettes for pymol
MooersLab/EasyPyMOL
Script to facilitate the making of horizontal scripts
urban233/PySSA
Python rich client for visual protein Sequence to Structure Analysis
Cardypro/StructureAnalyzer
A program analyzing 3D protein structures from PDB to generate 2D binding motifs
mtplr/pyMol-cookbook
Some notes (cookbook) for pyMol. Protein Crystallography course.
felixplasser/qc_pymol
Scripts for using pymol together with quantum chemistry programs
filipsPL/CADD-PW
Computer Aided Drug Design / Komputerowe Wsparcie Projektowania Leków
quantaosun/Pymol_Script
A python script for PyMol to make protein-ligand interaction images.
cusbg/AHoJ-project
:wave: Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
Fluorescence-Tools/LabelLib
Library for coarse-grained simulations of probes flexibly coupled to biomolecules.
MooersLab/orgpymolpysnips
Supports the use of PyMOL in literate programming in org-mode, which is best run in Emacs.
BIOS-IMASL/Azahar
A PyMOL plugin for construction, visualization and analysis of glycan molecules. https://www.ncbi.nlm.nih.gov/pubmed/27549814
unizar-flav/PyViewDock
Docking viewer plug-in for PyMOL
exTerEX/pymol-ramachandran
A simple script to generate Ramachandran plot from Pymol.
MooersLab/colabpymolpysnips
Library of PyMOL Python snippets for Google Colab.
zmactep/pymol-gpt
Fast and dirty GPT injection into PyMOL
asterlingchem/Tutorials
A repository containing tutorials for electronic structure analysis