Pinned Repositories
ChatMol
ChatGPT in PyMOL now!
ChatEnzyme
Ask anything about enzymes
CMPP
Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.
Computational-tools-for-protein-design
A maintained list of tools for computational protein design
DDGScan
DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
DEPECT
Design and Engineering of Protein and Enzymes by Computational Tools
gemma-chinese
Finetune Gemma for Chinese
mutation-stability-data
PymolFold
Protein folding in Pymol
AFIG
Using BUSCO Lineage data to train HMM model and annotate fungi genome
JinyuanSun's Repositories
JinyuanSun/PymolFold
Protein folding in Pymol
JinyuanSun/DDGScan
DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
JinyuanSun/gemma-chinese
Finetune Gemma for Chinese
JinyuanSun/ChatEnzyme
Ask anything about enzymes
JinyuanSun/Computational-tools-for-protein-design
A maintained list of tools for computational protein design
JinyuanSun/jinyuansun
JinyuanSun/ab_rmsd
Calculate the RMSD between two antibody structure (including nanobody and antibody).
JinyuanSun/MSAddG
JinyuanSun/pdbrefold
JinyuanSun/alpaca-lora
Instruct-tune LLaMA on consumer hardware
JinyuanSun/alphafold-peptide-receptors
Identifying peptide-receptor interactions using AlphaFold-Multimer
JinyuanSun/autoMD-gmx
automated simple MD with gromacs
JinyuanSun/ConPLex_dev
JinyuanSun/consistency_models
Official repo for consistency models.
JinyuanSun/evo
DNA foundation modeling from molecular to genome scale
JinyuanSun/fast-pdb-tools
A PDB tool designed to be light and faster.
JinyuanSun/GraDe_IF
Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
JinyuanSun/localpdb
Python package to manage protein structures and their annotations
JinyuanSun/OpenBioMed
JinyuanSun/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
JinyuanSun/PromoterCalculator
PromoterCalculator from Salis lab
JinyuanSun/promotor_mlflow
JinyuanSun/pyvenn
Python module for plotting Venn diagrams of 2..6 sets
JinyuanSun/RITA_from_0
JinyuanSun/Rosetta2Go
Package Rosetta in Docker and Singularity with MPI supported.
JinyuanSun/Score-Entropy-Discrete-Diffusion
Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution (https://arxiv.org/abs/2310.16834)
JinyuanSun/SecretoGen
preliminary code for SecretoGen. Work in progress.
JinyuanSun/streamlit-80
streamlit-based web APP for -80 storage
JinyuanSun/Uni-Fold
An open-source platform for developing protein models beyond AlphaFold.
JinyuanSun/UniKP