Pinned Repositories
ChatMol
ChatGPT in PyMOL now!
ChatEnzyme
Ask anything about enzymes
CMPP
Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.
Computational-tools-for-protein-design
A maintained list of tools for computational protein design
DDGScan
DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
DEPECT
Design and Engineering of Protein and Enzymes by Computational Tools
gemma-chinese
Finetune Gemma for Chinese
mutation-stability-data
PymolFold
Protein folding in Pymol
AFIG
Using BUSCO Lineage data to train HMM model and annotate fungi genome
JinyuanSun's Repositories
JinyuanSun/ECNet
An evolutionary context-integrated deep learning framework for protein engineering
JinyuanSun/small_datas
JinyuanSun/enz-pred
JinyuanSun/DEPECT
Design and Engineering of Protein and Enzymes by Computational Tools
JinyuanSun/FunclibLocal
Rosetta Funclib
JinyuanSun/biopython
Official git repository for Biopython (originally converted from CVS)
JinyuanSun/explore_motif_diversity
JinyuanSun/ProLigBERT
unified neural network to model protein, ligand, and their interaction
JinyuanSun/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
JinyuanSun/my_bio_script
my bioscript
JinyuanSun/SeqDDG
JinyuanSun/alphafold
Open source code for AlphaFold.
JinyuanSun/gvp-pytorch
Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
JinyuanSun/gvp
Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
JinyuanSun/MingLab_Protocol
Protocol of computational and bioinformatic methods for bio-catalysis (re)design or discovery
JinyuanSun/cgm_3d_cnn
JinyuanSun/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
JinyuanSun/SNAP
Gene prediction software
JinyuanSun/MarBGC
to find BGC in marine microbes
JinyuanSun/SHE
redesign protein to a Ser-His-Glu hydrolase
JinyuanSun/Azimuth
Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency
JinyuanSun/Tome
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
JinyuanSun/song_of_fire
prediction of thermostability changes of proteins caused by (single point) mutations
JinyuanSun/CAGE-Prox
Computer aided proximal decaging as a universal strategy for temporal protein activation
JinyuanSun/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
JinyuanSun/get-sequence-fasta-by-UniProt-ID
JinyuanSun/linuxdesktopdocs
Documentation for Linux Desktops
JinyuanSun/deeplearning-biology
A list of deep learning implementations in biology
JinyuanSun/PDB2ProteinData
Converts PDB file to manageable objects broken down into protein molecule, chain, residue, atom, and coordinate.
JinyuanSun/gofeat
GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data