Pinned Repositories
ChatMol
ChatGPT in PyMOL now!
ChatEnzyme
Ask anything about enzymes
CMPP
Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.
Computational-tools-for-protein-design
A maintained list of tools for computational protein design
DDGScan
DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
DEPECT
Design and Engineering of Protein and Enzymes by Computational Tools
gemma-chinese
Finetune Gemma for Chinese
mutation-stability-data
PymolFold
Protein folding in Pymol
AFIG
Using BUSCO Lineage data to train HMM model and annotate fungi genome
JinyuanSun's Repositories
JinyuanSun/the-algorithm
Source code for Twitter's Recommendation Algorithm
JinyuanSun/ProDESIGN-LE
A accurate and efficient protein sequence design approach
JinyuanSun/GPSE
Genome scAle Substrate Specific Enzyme pRediction
JinyuanSun/evolocity
Evolutionary velocity with protein language models
JinyuanSun/ddgscan-doc
Docs for ddgscan
JinyuanSun/JinyuanSun.github.io
JinyuanSun/ByProt
JinyuanSun/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
JinyuanSun/signalp-6.0
Multi-class signal peptide prediction and structure decoding model.
JinyuanSun/maker-docker
Docker image as base for building full MAKER image
JinyuanSun/openmm-tutorial-msbs
OpenMM tutorial for the MSBS course
JinyuanSun/mutation-stability-data
JinyuanSun/deepddg-pytorch
JinyuanSun/ProteinMPNN
Code for the ProteinMPNN paper
JinyuanSun/DLPacker-pytorch
a pytorch versioin of DLPacker
JinyuanSun/denoising-diffusion-pytorch
Implementation of Denoising Diffusion Probabilistic Model in Pytorch
JinyuanSun/OmegaFold
OmegaFold Release Code
JinyuanSun/pymol-vis
PyMOL extensions for protein artification
JinyuanSun/RFDesign
Protein hallucination and inpainting with RoseTTAFold
JinyuanSun/AutoDockTools_py3
Python3 translation of AutoDockTools
JinyuanSun/torsional-diffusion
Implementation of Torsional Diffusion for Molecular Conformer Generation
JinyuanSun/MPXV_research
Researches about Monkeypox virus
JinyuanSun/CMPP
Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.
JinyuanSun/lab-gui-tools
GUI tools for my lab
JinyuanSun/PSG-BAR
This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks
JinyuanSun/DeepSniper
JinyuanSun/drug_pred
JinyuanSun/MONN
MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Proteins
JinyuanSun/CAMP
predicting peptide-protein interactions
JinyuanSun/DeepET_reps
An installable library to get DeepET representations.