BioRRW
I'm a bioinformatician with a focus on building pipelines for use on HPC systems.
Colorado State UniversityFort Collins, CO
Pinned Repositories
AMR-and-Virulence-factor-visualization-in-R
R script to generate heatmaps from AMR and Virulence Factor presence/absence data
bear-wgs
USDA ARS BEARRU Whole Genome Sequencing Workflow
BioRRW
BioRRW.github.io
Reed Woyda's website describing who I am and what I like to do.
DRAM2
created from rmFlynn collection_of_typical_ocoli_samples
Nextflow-Adventures
Repository full of Nextflow Examples and Tutorials
Random-R-Scripts-heatmaps-and-clustering
Script to make pheatmaps with metadata in R using presence/absence (or continuous) contingency tables
Reads2Resistome
Hybrid and non-hybrid whole genome assembler with resistome identification for Illumina, PacBio and Nanopore reads.
CAMPER
This is a repository for CAMPER.
JGI-API-Request
Python script is designed to fetch and process genomic data from the Joint Genome Institute (JGI) API, allowing users to request file downloads programmatically based on given taxon IDs.
BioRRW's Repositories
BioRRW/Reads2Resistome
Hybrid and non-hybrid whole genome assembler with resistome identification for Illumina, PacBio and Nanopore reads.
BioRRW/AMR-and-Virulence-factor-visualization-in-R
R script to generate heatmaps from AMR and Virulence Factor presence/absence data
BioRRW/Nextflow-Adventures
Repository full of Nextflow Examples and Tutorials
BioRRW/Random-R-Scripts-heatmaps-and-clustering
Script to make pheatmaps with metadata in R using presence/absence (or continuous) contingency tables
BioRRW/bear-wgs
USDA ARS BEARRU Whole Genome Sequencing Workflow
BioRRW/BioRRW
BioRRW/BioRRW.github.io
Reed Woyda's website describing who I am and what I like to do.
BioRRW/DRAM2
created from rmFlynn collection_of_typical_ocoli_samples
BioRRW/Electronic-Lab-Notebook
Obsidian Labnotebook
BioRRW/medusa
A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
BioRRW/phastaf
Identify phage regions in bacterial genomes for masking purposes
BioRRW/Phylogenomic
BioRRW/Planets
BioRRW/qCMB_OpenSource_Webinar
Quantitative Cell and Molecular Biology Webinar on OpenSource software, version control and GitHub/Git
BioRRW/shell-programming
Shell Programming Examples
BioRRW/sra_read_downloader
A handy script for downloading reads from any kind of accession from the SRA.
BioRRW/JGI-API-Request
Python script is designed to fetch and process genomic data from the Joint Genome Institute (JGI) API, allowing users to request file downloads programmatically based on given taxon IDs.