Pinned Repositories
BioCatalyzer
BioCatalyzer: a rule-based tool to predict compound metabolism
biotmpy
cobamp
Constraint-based modeling framework for the enumeration of pathway analysis concepts
DeepMol
DeepMol: A Machine and Deep Learning Framework for Computational Chemistry
drug_response_pipeline
MEWpy
Metabolic Engineering Workbench
propythia
Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.
ReactEA
ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design
s2m2
Materials for the Summer School in Metabolic Modeling - 2024 edition
troppo
Reconstruction algorithms for Python
BiSBi @ Centre of Biological Engineering's Repositories
BioSystemsUM/DeepMol
DeepMol: A Machine and Deep Learning Framework for Computational Chemistry
BioSystemsUM/MEWpy
Metabolic Engineering Workbench
BioSystemsUM/propythia
Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.
BioSystemsUM/troppo
Reconstruction algorithms for Python
BioSystemsUM/cobamp
Constraint-based modeling framework for the enumeration of pathway analysis concepts
BioSystemsUM/ReactEA
ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design
BioSystemsUM/drug_response_pipeline
BioSystemsUM/BioCatalyzer
BioCatalyzer: a rule-based tool to predict compound metabolism
BioSystemsUM/biotmpy
BioSystemsUM/deepmol_case_studies
Case Studies from the DeepMol Publication
BioSystemsUM/s2m2
Materials for the Summer School in Metabolic Modeling - 2024 edition
BioSystemsUM/DeepSweet
A Machine and Deep Learning pipeline to classify sweetness
BioSystemsUM/specmine
BioSystemsUM/biomeneco
A project to accelerate gap-filling of metabolic models
BioSystemsUM/bit-analysis
BiGG Integration Tool Analysis
BioSystemsUM/bRNAsPipe
Pipeline for RNAseq analysis in Bash and scripts for microarray gene expression analysis in R
BioSystemsUM/diel_models
BioSystemsUM/human_ts_models
A repository for tissue-specific model reconstructions using troppo
BioSystemsUM/merlinv4_paper
Models analysis for merlin's version 4 submission on Nucleic Acid Research
BioSystemsUM/optimModels
Framework to optimize metabolic models using evolutionary computation.
BioSystemsUM/epigen
Reconstruction of cell-specific models capturing the influence of metabolism on DNA methylation in cancer
BioSystemsUM/lab_models
BioSystemsUM/specmine.datasets
A repository for the datasets used in R package specmine
BioSystemsUM/BioCatalyzer-CaseStudy
BioSystemsUM/BioISO
BioSystemsUM/biosynth-framework
BioSystemsUM/cobamp-grasp
A cobamp-dependent framework enabling gene regulatory and signalling pathway integration in metabolic models
BioSystemsUM/onmtreaction
BioSystemsUM/transyt